Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01220 ATGGGAAGGGTTTTTGTTGTGGAAAAGGAAGGGCGATCGTACAGATGCAAGTTCTGCAATACACAGTTAGCTCTCGCCGATGACCTTGCATCTCGGACCTTTCATTGCCGCCGGGGAAAAGCTTACCTCTTCAATCATGTGATAAACATTTCTTCGGGAGCATTGGAAGAGAGGATGATGCTCTCAGGACTACATACAGTAGCTGACATATTTTGTTGCACATGTGGCCAAATTGTCGGGTGGAAATATGACGCAGCACACGAGAAGAGCCAGAAATACAAGGAGGGCAAGTTTGTTCTTGAAAGGGGGAGGATCGTCGATGACACATTGAATTTTCGACTTAGTATCAGTGATAGCGATGATAATTAG 369 45.26 MGRVFVVEKEGRSYRCKFCNTQLALADDLASRTFHCRRGKAYLFNHVINISSGALEERMMLSGLHTVADIFCCTCGQIVGWKYDAAHEKSQKYKEGKFVLERGRIVDDTLNFRLSISDSDDN 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8831517 8833863 - CmaCh01G012200.1 Cma01g01220 286913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01220 122 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Cma01g01220 122 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 14 106 IPR004910 -
Cma01g01220 122 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 109 IPR039058 -
Cma01g01220 122 PANTHER BNAA02G09980D PROTEIN 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01220 - - - cmos:111446692 254.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01220 Cma-Chr1:8831517 Cma09g00848 Cma-Chr9:4151087 5.16E-65 dispersed
Cma01g01220 Cma-Chr1:8831517 Cma18g00387 Cma-Chr18:2112852 5.01E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g185 . . . . . . . . . . Cma01g01220 . Car01g01043 Car09g00760 Sed04g2416 Cpe06g00674 Cpe02g00692 Bhi09g03456 Tan01g4371 Cmetu07g1273 . Hepe01g1404 Mch11g1047 . Cla11g01741 . Cec11g1830 . Clacu11g1970 Cmu11g1780 Cre11g2186 . Cone9ag0190 . . Lsi04g02051 Csa04g02323 . Cme07g00575 . . . . . . . . . Cmo01g01274 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000236 2 9 4 4 3 3 7 3 3 4 6 3 6 4 5 7 2 5 7 4 5 4 5 3 5 3 5 13 16 4 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01220 Cma_Chr01 FPKM 9.26843 12.426264 16.682232 19.143953 9.384368 12.3996 12.916965 36.85202 40.533768 44.301804