Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01222 ATGACTTTCCATCCAATTTCAAAAGAAGTATACGATCCCACGCGGCGCCGCAATCACAACCAAAATTGTCAGTTTTTTCCATTTTCCTTTTCTTTAAGTTGCCGTCAGCAACCGGTTACCGGTGGCACCCACGAACCAAACCTCCCACTTCTTTACATTTTAAAACAGAACCGATTAATGGCTGCCGGAGACCGATCTACTTCAACCGCCGTCGTTGAGATCCGGTACAGAGGTGTTAGAAAGAGGCCATGGGGCCGTTACGCAGCGGAAATCCGCGACCCTCGCAAAAAAACTAGGGTCTGGCTTGGCACCTTCAACACGGCGGAGGAAGCTGCTCGTGCTTACGACACAGCGGCGCGTGAATTCCGAGGCGCTAATGCCAAAACCAACTTCCCAACTCCGAACGAATATCTCGTCGACGACAACAACAACAAGTTCCGTAGATCCACTTGCAGTAGTCCCAGCGAGAGCAGCACCGTGGACTCCTCTTCTGCTCCATCCCCGACGGATGCTTCCCTCACTCGCTTCCTCGATGGCAGCCACCCTCCGGCCATTTCCCGTCCAATCTTTTTCTTTGACGCGTTCGCTCAGGCGGAGAAGATGAGCGACTTTCACCGGACTGTAACCGTCGCTGTTGCCGGCGGATCGGCGAGCGACTCCGATTCCTCATCCGTAGTTGATTTCGACGATGATTCGCAAAAATCACGGCCGTTTGATTTTGACCTGAATCTTCCGGCGGTGGAAGTTGCCTGA 753 52.99 MTFHPISKEVYDPTRRRNHNQNCQFFPFSFSLSCRQQPVTGGTHEPNLPLLYILKQNRLMAAGDRSTSTAVVEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPTPNEYLVDDNNNKFRRSTCSSPSESSTVDSSSAPSPTDASLTRFLDGSHPPAISRPIFFFDAFAQAEKMSDFHRTVTVAVAGGSASDSDSSSVVDFDDDSQKSRPFDFDLNLPAVEVA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8835781 8838691 - CmaCh01G012220.1 Cma01g01222 286915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01222 250 PANTHER ERF FAMILY PROTEIN 66 172 - -
Cma01g01222 250 PANTHER ERF FAMILY PROTEIN 183 238 - -
Cma01g01222 250 MobiDBLite consensus disorder prediction 214 238 - -
Cma01g01222 250 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Cma01g01222 250 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Cma01g01222 250 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Cma01g01222 250 MobiDBLite consensus disorder prediction 128 174 - -
Cma01g01222 250 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 66 172 - -
Cma01g01222 250 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 183 238 - -
Cma01g01222 250 MobiDBLite consensus disorder prediction 126 178 - -
Cma01g01222 250 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Cma01g01222 250 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Cma01g01222 250 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Cma01g01222 250 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Cma01g01222 250 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01222 K09286 EREBP; EREBP-like factor - csv:101213540 211.846
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01222 Cma09g00846 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01222 Cma-Chr1:8835781 Cma11g01910 Cma-Chr11:12628044 2.05E-36 dispersed
Cma01g01222 Cma-Chr1:8835781 Cma13g00629 Cma-Chr13:6029634 1.24E-28 wgd
Cma01g01222 Cma-Chr1:8835781 Cma18g00388 Cma-Chr18:2117705 2.19E-33 wgd
Cma01g01222 Cma-Chr1:8835781 Cma19g00998 Cma-Chr19:8657974 1.14E-29 wgd
Cma01g01222 Cma-Chr1:8835781 Cma07g00227 Cma-Chr7:1040268 1.13E-32 wgd
Cma01g01222 Cma-Chr1:8835781 Cma09g00846 Cma-Chr9:4147500 5.00E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g184 . . . Bda09g00524 . Bpe02g01898 . . . . Cma01g01222 Cma09g00846 Car01g01044 Car09g00759 Sed04g2417 . . Bhi09g03458 Tan01g4370 Cmetu07g1192 . Hepe01g1405 Mch11g1046 . Cla11g01739 Cam11g1809 Cec11g1829 Cco11g1835 Clacu11g1969 Cmu11g1779 Cre11g2185 Cone6ag0166 Cone9ag0191 . . Lsi04g02049 Csa04g02321 Chy07g00055 Cme07g00574 . . . . . Bpe01g00438 . . . Cmo01g01275 Cmo09g00840 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006814 3 1 2 1 2 0 2 1 0 1 1 1 2 1 1 2 0 2 0 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34323 PF00847 AP2 6.10E-14 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01222 Cma_Chr01 FPKM 30.920319 36.297768 65.394295 65.425461 26.02318 22.657511 22.166809 88.091972 91.783035 80.478973