Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01224 ATGGAGGAATTTGCTGTGGATGATCCGACCCAGCTACTCGAAGCAGCTGCAGATTTCGCAAATTATCCCGGTGTTCGGACTGATGAGTCGGTGAAGGAATTCTTCAGCCGCTTTCCCCTTCCCGTCGTAATCAATGCTTTACAAGCAAAAGCGGAAATTCCTGGTTTGGAAAACACTTTGGTTGCATGTCTCGACAGGATATTCAAAACCAAGTATGGTGCTTCACTTATACCACATTATATGCCCTTTGTACAGGTTGGACTACAAGCTGATTCTCAAGCAGTTAGAAGCTTAGCTTGTAAAACGGTCACTCGCCTGCTGGAGGAGACCGATCCAACTACTCAATTGGCCCCACAACTTATTGTTGACTATAACATCTATCCACTTTTGATTGAGTGCCTTCTCAATGGTAACGAACAAGTTGCTAATTCATCAATGGATGCATTAAAGAAATTAGCTGCATTTCCAAAGGGGATGGAAATCATCTTCCCAACAAATAAAACGGAAGCAACACACCTAGGAACTGTAGCTTCAACATGCTCATCTCTGGGAAGAGTCCGAGTTATGGCTTTGATAGTGAAACTGTTTTCAGTTTCTAGCTCTGTGGCATCTGCAGTATACAATTCAAATTTACTAAACCTACTGGAAAGTGAAATCAGCAACTCAAACGACACACTTGTAACTTTAAGCGTGTTGGAGCTCTTGTATGAGTTAGTGGAGATTGAACATGGTACAAATTTTTTGCCAAGGACCAGCTTTCTCCAACTACTAAGCTCTATAATCAGCAACCGGTCGGCAGAGTCTATATTAAGATCCAGAGCAATGGTCATTAGTGGAAGACTTTTGTCTAAAGAGAATATTTTCTCGCTTGTAGATGAATCTTGTGTACGAATTTTAATATCTTCTATAGATGAAATTCTTGGATCATCTGAAGGCCAGGATGTAAATGTATGTGAATCTGCATTCGAAGCACTGGGTCAAATTGGTTCGAGCAAATGGGGAGCCACTTTACTGCTGTCAAGTTATCCAACTTGTGTGAAGTATGTAATTAATGCAGCGTTTGATCGGCATGAACATGGTAAACAGCTGGCAGCCATGCACGCTCTTGGTAACATCTTTGGTGAAACTCGATCCGAGAATGATATTATGCTGAATGATAATGCAGAAGAAAATTTAGGGGACTTGATTTATCAAACTGCATCCAGAAGTCCAAAAATAACGCCATCAGGCCTTATTCTAGCTGTCCTTCAACAGGACTCTGAGATTCGGTTGGCGAGTTATAGAATGATAACTGGGTTGGTCGCTCGACCGTGGTGTCTTATGGAAATCTGCTCGAAACAAGACATAATAAATATAGTTTCTGATGCAAGTACCGAGACTACAAAAATAGGAATGGAAGCTAGATATAACTGTTGTTTGGCTATCCATAAGGCATTCATGTCTTCAACAAGGCTTACGGGCGATCCTGCCCTTGCTGGAATAGCTTCGAAGTTGCAGGAAGCTGTTCAAAATGGTCCATATCTTAGTAGAAGAAAACTGGAAACTCAGCCAGCAATAATGACAGCTGAGAGATTTTAG 1578 41.51 MEEFAVDDPTQLLEAAADFANYPGVRTDESVKEFFSRFPLPVVINALQAKAEIPGLENTLVACLDRIFKTKYGASLIPHYMPFVQVGLQADSQAVRSLACKTVTRLLEETDPTTQLAPQLIVDYNIYPLLIECLLNGNEQVANSSMDALKKLAAFPKGMEIIFPTNKTEATHLGTVASTCSSLGRVRVMALIVKLFSVSSSVASAVYNSNLLNLLESEISNSNDTLVTLSVLELLYELVEIEHGTNFLPRTSFLQLLSSIISNRSAESILRSRAMVISGRLLSKENIFSLVDESCVRILISSIDEILGSSEGQDVNVCESAFEALGQIGSSKWGATLLLSSYPTCVKYVINAAFDRHEHGKQLAAMHALGNIFGETRSENDIMLNDNAEENLGDLIYQTASRSPKITPSGLILAVLQQDSEIRLASYRMITGLVARPWCLMEICSKQDIINIVSDASTETTKIGMEARYNCCLAIHKAFMSSTRLTGDPALAGIASKLQEAVQNGPYLSRRKLETQPAIMTAERF 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8843641 8855556 - CmaCh01G012240.1 Cma01g01224 286917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01224 525 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 2 525 IPR019538 GO:0043248
Cma01g01224 525 SUPERFAMILY ARM repeat 81 482 IPR016024 -
Cma01g01224 525 Gene3D - 5 406 IPR011989 -
Cma01g01224 525 Pfam Proteasome non-ATPase 26S subunit 63 517 IPR019538 GO:0043248
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01224 K06692 PSMD5; 26S proteasome non-ATPase regulatory subunit 5 - csv:101213054 858.211
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g181 . . . Bda09g00526 . . . . . . Cma01g01224 . Car01g01046 . . . Cpe02g00690 Bhi09g03461 . . . Hepe01g1407 . . Cla11g01737 Cam11g1807 Cec11g1827 . Clacu11g1967 Cmu11g1777 Cre11g2183 . . Cone14ag1055 Cone15ag1048 Lsi04g02047 Csa04g02319 Chy07g00053 Cme07g00572 . . . . . . . . . Cmo01g01277 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010184 1 2 0 0 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01224 Cma_Chr01 FPKM 11.624295 14.057637 20.310913 21.767944 12.488502 11.790312 13.493845 35.124241 32.534283 37.11343