Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01231 ATGGCGTCCACTTCCAATTCCAATTCCAATTCAACTGGCGTTTCCGAAAGAATCAAATCCGCTGCCACTATTATGAACTCTGAGAATCAATCCCTCCTTGCCGAATTACGGAAGTCGCTGATCATGATGAAGGAAATCGGGGTGGATTTGGAGAGGGACAATCAGTCGAGGATGGTCAAGGAGCTTGAAAATTCTGTTGTTGAGCTGTTGAGTACTTATGAAAAATGTAGCAACTTTTCATCTGCAATTCAGTCAGTTGGAAATATATATGAACCACAAGAAGAGTTAACTGATTTTGAGAAACTACTTGACAATGAAGTTGCAAAAGTCAGCGAAAATTCGTCTTCAAATTTGCAGAACCATTCAATAATTCGACAGTTTAGAGAAGCTATTTGGAATGTTCATCACGCAGGACAACCAATGCCTGGTGAGGAGCAGGAGGACGTTGTGATGACCAGTACTCAGTGTAATCTATTGAATGTCACTTGCCCGTTGAGTGGAAAGCCTGTCACTGAATTGGCAGAACCTGTTAGAAGTACGGAATGCAAGCACGTCTACGAAAAGGTTGCCATAATGCAGTACCTAAAATCCAAGAGATCACGAGCTCAATGCCCTGTTGCTGCCTGTCCTAAGATGTTGCAGCCTGAAAAAGTCATTTCTGATCCGTTCTTACCGATTGAAATTGATGAACTACGCAAAACGTCTAAGCATTCAGTGAGGATACAGGATTTCACAGAGGTTGATGCAGATTAA 753 42.1 MASTSNSNSNSTGVSERIKSAATIMNSENQSLLAELRKSLIMMKEIGVDLERDNQSRMVKELENSVVELLSTYEKCSNFSSAIQSVGNIYEPQEELTDFEKLLDNEVAKVSENSSSNLQNHSIIRQFREAIWNVHHAGQPMPGEEQEDVVMTSTQCNLLNVTCPLSGKPVTELAEPVRSTECKHVYEKVAIMQYLKSKRSRAQCPVAACPKMLQPEKVISDPFLPIEIDELRKTSKHSVRIQDFTEVDAD 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8877366 8880310 + CmaCh01G012310.1 Cma01g01231 286924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01231 250 SUPERFAMILY RING/U-box 161 233 - -
Cma01g01231 250 Pfam Zinc-finger of the MIZ type in Nse subunit 148 209 IPR004181 GO:0008270
Cma01g01231 250 PANTHER UNCHARACTERIZED 6 238 IPR026846 GO:0000724|GO:0019789|GO:0030915
Cma01g01231 250 CDD SPL-RING_NSE2 162 230 IPR004181 GO:0008270
Cma01g01231 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 241 IPR013083 -
Cma01g01231 250 ProSiteProfiles Zinc finger SP-RING-type profile. 145 233 IPR004181 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01231 K22756 NSMCE2, NSE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-] - csv:101211685 411.764
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g172 . . . . Bpe09g00244 . . . . . Cma01g01231 . Car01g01052 . Sed04g2426 . Cpe02g00685 Bhi09g03470 Tan01g4359 Cmetu07g1823 . Hepe01g1414 . . Cla11g01732 Cam11g1801 Cec11g1822 Cco11g1828 Clacu11g1960 Cmu11g1770 . . . . . Lsi04g02041 Csa04g02311 Chy07g00047 Cme07g00565 . . . Bda12g00828 . . Bma07g01160 . . Cmo01g01284 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009484 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01231 Cma_Chr01 FPKM 1.819611 1.517407 4.070064 4.179678 7.633668 6.994526 6.745712 5.387532 3.94933 6.085378