Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01232 ATGGCTGCCTATAGAACGGACGACGATTACGATTACCTCTTCAAAGTGGTTCTCATCGGTGACTCGGGTGTGGGCAAATCCAATCTCCTCTCCAGGTTTACGCGCAATGAGTTCAGTCTCGAGTCCAAATCCACAATCGGCGTCGAATTCGCCACGCGGAGTATTCGAGTCGATGATAAGATTGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAGAAAGATACCGTGCAATCACAAGTGCATACTATCGAGGAGCCGTTGGTGCATTGCTTGTTTATGATGTAACACGACACGTGACGTTCGAAAACGTTGAGAGATGGTTGAAAGAACTCAGGGATCACACGGATTCCAATATTGTGATAATGCTAGTTGGTAACAAGGCAGACTTGCGACATCTGCGTGCTGTTTCGACTGAAGATGCCTCGGCCTTTGCAGAGAAGGAGAACACTTTCTTCATGGAGACATCTGCCCTCGAGTCTCTGAATGTCGAGAGTGCTTTTACCGAAGTGCTAACACAAATCTATCGTGTAGTTTGCAGAAAAGCACTCGAGATTGGGGAGGATGCCACAACATTGCCTAAAGGACAAACCATTAACGTTGGAAACAAGGATGATGTTTCTGCAGTGAAGAAAGTTGGTTGCTGCTCTTCATGA 654 47.09 MAAYRTDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDASAFAEKENTFFMETSALESLNVESAFTEVLTQIYRVVCRKALEIGEDATTLPKGQTINVGNKDDVSAVKKVGCCSS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8880307 8882305 - CmaCh01G012320.1 Cma01g01232 286925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01232 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Cma01g01232 217 SMART ran_sub_2 19 208 - -
Cma01g01232 217 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Cma01g01232 217 PANTHER RAS-RELATED PROTEIN RABA1F-LIKE 1 215 - -
Cma01g01232 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Cma01g01232 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Cma01g01232 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Cma01g01232 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Cma01g01232 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Cma01g01232 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Cma01g01232 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Cma01g01232 217 PANTHER DRAB11-RELATED 1 215 - -
Cma01g01232 217 Gene3D - 6 215 IPR027417 -
Cma01g01232 217 ProSiteProfiles small GTPase Ras family profile. 2 217 IPR001806 GO:0003924|GO:0005525
Cma01g01232 217 SMART rab_sub_5 14 177 - -
Cma01g01232 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Cma01g01232 217 SMART ras_sub_4 11 177 - -
Cma01g01232 217 CDD Rab11_like 11 175 - -
Cma01g01232 217 ProSiteProfiles small GTPase Rho family profile. 7 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01232 K07904 RAB11A; Ras-related protein Rab-11A - csv:101210695 417.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01232 Cma09g00833 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01232 Cma-Chr1:8880307 Cma02g00191 Cma-Chr2:868595 1.43E-144 dispersed
Cma11g00306 Cma-Chr11:1520886 Cma01g01232 Cma-Chr1:8880307 3.43E-75 dispersed
Cma01g01232 Cma-Chr1:8880307 Cma19g01008 Cma-Chr19:8679583 1.42E-115 wgd
Cma01g01232 Cma-Chr1:8880307 Cma09g00833 Cma-Chr9:4097760 1.84E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g151 . . . . . . . . . . Cma01g01232 Cma09g00833 Car01g01053 Car09g00748 . Cpe06g00664 Cpe02g00684 Bhi09g03479 . . . Hepe01g1418 Mch11g1033 . Cla11g01728 Cam11g1798 Cec11g1819 Cco11g1825 Clacu11g1957 Cmu11g1767 Cre11g2175 . Cone10ag1362 . . Lsi04g02036 Csa04g02308 Chy07g00044 Cme07g00557 . . . . . . . . . Cmo01g01285 Cmo09g00827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01232 Cma_Chr01 FPKM 12.273511 15.289422 20.869904 19.29388 10.257527 11.700716 9.687449 28.444595 25.484682 26.556162