Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01234 ATGGGAAAGTTGTCCTTTCTGTTTTCTTTCTTGTTGTTTTCTCTAATAGTTGCTGGAAAGCATGGAACTCAAAGAAATGTGGGCTCAAAAATGATTGGTGGTGGAAAGGGCAGAATAGGGGCCATTGTAGACTGTAGTTCTAGGATTGGTAAAGAACAGAGTTTAGCCATGCGGATGGCTATAGAGAGTTTTAACTCGAACGATCAAAATTTCAGTCTTGTCGTCACAGACTCCAAAAGTAATCCCTATCAGGCAGCTCTTGCAGCTGAAGATCTGATCAGTAGGCAACGAGTTCAGGTTCTTATAGGGCCACAAACCTGGGAAGCTGTTTTTGTAGTTGCCAAGGTTGGAAATAAGAATCAGATACCGATACTGGCGTTGGCTAATGACATGCCAAAGTGGGCAACTGAGAGGTTGGATTTTGTGATCCAAGCTTCTCCATCCCAGTTGAATCAAATGAAGGCCATAGCTGCTATTATTGGTTCGTGGGATTGGCATCTGGTTAATGTTATATATGAAGAAGGAGATTTCTCGACCGTGGACATATTTCCTTACCTTGAGCATGCTCTCAAAGATGTAGGAGCTGAAATAAGTGAATTTGTTGGTCTCCCCCATTTTGATTCTAATTTACTATCCACTGAACTTGAGAGGCTAAGACGAGGGCCAAGTAGAGTTTTTGTAGTTCATATGTCTTTCAAGTTGGCATTGCATCTATTTCAGACTGCAAAAGACATGGAAATGTTGGGAAAGGGTTATGTTTGGATCACTACTGATTCTTTCACAAGCCTTGCACATTCTATGAATGCTCCTACCAGTTCTTCACTGCAAGGAGTTATTGGAGTCAAGAGGTATTTCCCGGAAATCAACCCTCTATTTCATAATTTTTATATTCAGTTCTGTAGAAGGTTTAGATTAGAGCATTCTGACGAGTACAACCACGAGCCTAGTATTTTTGCGGTACAGGCTTATGATGCCACAAGAACAGCAGCTATGGCAATGAGTGAAACCCGAGAAACAGGTCATCACTTGTTGGAATCAATCAAGCTCACTGATTTTCAAGGATTGGGAGGAAAGGTTCAGTTTAAGGACAGAAAATTAGCCCCAGCCCATACTTTTCAGATCGTCAATGTTGTGGGGAGAAGTTATAGGGACTTAGGCTTCTGGTCTGACGAATTAGGCTTCGCACGAGAATTGGGGGGAAGTTCGTCTGCTAACTTGTCAATGAAGGATCTTGGTCAAGTGTTTTGGCCAGGTGGATCTACAGATACTCCAAGGGGATGGGCTGTACCGACAGATGCCAATGAGTTGAGAATTGGTGTGCCAACTAGTCCCATGTTCAAGCAGTATGTAAATGTGGAAGGAGATCAAACAGGAAACAATTTATCCTTCAATGGACTTGCAATCGATTTGTTTAAAGCAACCTTAGACCATCTGCACTTCCCTCTGCCACACGAGTTTTTCGCTTACAATGGAACGTATGATGATTTAGTGAAGAAAATCTATTTGAAGAACTTTTGTCTGAAGATACATCTGTTTAAGTTGGGTAACAAAGCTAACACTGATATCTCATGGAAAGATCCAACAACTTATTTTTTGTTATGCCTGTCTATTAAGGAATTCGATGCAGCAGTAGGTGACATAGCAATAGTATCAACGCGTTACGAACATGCAGAATTTACACATCCTTACACTGAAGCAGGACTTGTGATGATTGTTCCTACCACAAAAAATAGAAGTAATAGAGCATTGTTTTTCACAAAGCCCTTTACAGTGACCTTGTGGATCATAATTGCTGTGGTAAACGTGTATAATGGCTTTGTTGTTTGGTTCATAGAACGAAATCATGGTCCTGAACCTGAAGGTTCGATGTTTAATCATGCTGGAACCATACTCTACTCTTCCTTCACCACTCTCTTCTCCTTGCATGGTAACAGGCTGCACAGTAACTTGTCGAGGATGACCATGATGGTTTGGTTATTTGTAGCACTCGTGATAACTCAGATATACACCGCCAATCTTACTAGCATGCTCACTATTCAAAAGCTCGAACCGACTATATCGGATATTGAAACTCTCCATAGAATGAATGCATTTGTGGGATACGGCAGAGGATCCTTTGTCAAAGGATATTTGGAGCAAGTTTTACACTTTCCTACAGAAACCATAAGAAACTACTCTACCCATGAGGGTTTAGCTGACGCTCTCAGAAATCAAGAGATAGCAGCTACTTTTCTTGAAGTTCCCTTTGCAAAACTATTCCTTGCAAGATATTGCCGGGAGTTCAAGATTGCTGGGCCGACCTACAAAGTTGGAGGATTTGGATTTGCGTTTCCGAGAGGCTCTCTGTTGTTACCATATATCGACGAAGCATTGCTTAAGGTATCTGAAACTGGGAAGTATAGAGAGCTGGAGGACAGCATGATTGCTAATGTGAAATGTGAGGAAGGGGAAGGGAAAGATAGAATTACAAGCCTCAGTCCCAATAGCTTCTTTTTTCTGTTTTTGTTGAGTGCAGGAGTATCAACAATAGCACTCGCCTTGTACTCCTTCAATGCTCGTAACTCGAATCTTCAGCGAAACAATGTTTGGAGATTAATGGTAGCTGTAGTGAGACACTGGGGAATCAACAGAACTCGATTTTTGCGACTGAGAAGGGATGAGTCTCGAACCATCTTAAATAACATGGGAATTCAAGTCTAG 2700 41.56 MGKLSFLFSFLLFSLIVAGKHGTQRNVGSKMIGGGKGRIGAIVDCSSRIGKEQSLAMRMAIESFNSNDQNFSLVVTDSKSNPYQAALAAEDLISRQRVQVLIGPQTWEAVFVVAKVGNKNQIPILALANDMPKWATERLDFVIQASPSQLNQMKAIAAIIGSWDWHLVNVIYEEGDFSTVDIFPYLEHALKDVGAEISEFVGLPHFDSNLLSTELERLRRGPSRVFVVHMSFKLALHLFQTAKDMEMLGKGYVWITTDSFTSLAHSMNAPTSSSLQGVIGVKRYFPEINPLFHNFYIQFCRRFRLEHSDEYNHEPSIFAVQAYDATRTAAMAMSETRETGHHLLESIKLTDFQGLGGKVQFKDRKLAPAHTFQIVNVVGRSYRDLGFWSDELGFARELGGSSSANLSMKDLGQVFWPGGSTDTPRGWAVPTDANELRIGVPTSPMFKQYVNVEGDQTGNNLSFNGLAIDLFKATLDHLHFPLPHEFFAYNGTYDDLVKKIYLKNFCLKIHLFKLGNKANTDISWKDPTTYFLLCLSIKEFDAAVGDIAIVSTRYEHAEFTHPYTEAGLVMIVPTTKNRSNRALFFTKPFTVTLWIIIAVVNVYNGFVVWFIERNHGPEPEGSMFNHAGTILYSSFTTLFSLHGNRLHSNLSRMTMMVWLFVALVITQIYTANLTSMLTIQKLEPTISDIETLHRMNAFVGYGRGSFVKGYLEQVLHFPTETIRNYSTHEGLADALRNQEIAATFLEVPFAKLFLARYCREFKIAGPTYKVGGFGFAFPRGSLLLPYIDEALLKVSETGKYRELEDSMIANVKCEEGEGKDRITSLSPNSFFFLFLLSAGVSTIALALYSFNARNSNLQRNNVWRLMVAVVRHWGINRTRFLRLRRDESRTILNNMGIQV 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8887488 8891809 - CmaCh01G012340.1 Cma01g01234 286927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01234 899 SMART GluR_14 437 810 IPR001320 GO:0015276|GO:0016020
Cma01g01234 899 CDD GluR_Plant 434 808 - -
Cma01g01234 899 Gene3D - 36 156 - -
Cma01g01234 899 PANTHER GLUTAMATE RECEPTOR 30 886 - -
Cma01g01234 899 Pfam Receptor family ligand binding region 54 378 IPR001828 -
Cma01g01234 899 Gene3D - 157 287 - -
Cma01g01234 899 CDD PBP1_GABAb_receptor_plant 38 398 IPR044440 -
Cma01g01234 899 Pfam Bacterial extracellular solute-binding proteins, family 3 538 805 IPR001638 -
Cma01g01234 899 Gene3D - 288 366 - -
Cma01g01234 899 Gene3D - 583 713 - -
Cma01g01234 899 SUPERFAMILY Periplasmic binding protein-like II 538 805 - -
Cma01g01234 899 Pfam Ligand-gated ion channel 806 838 IPR001320 GO:0015276|GO:0016020
Cma01g01234 899 SUPERFAMILY Periplasmic binding protein-like I 38 427 IPR028082 -
Cma01g01234 899 Gene3D - 429 582 - -
Cma01g01234 899 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 886 - -
Cma01g01234 899 PIRSF IGluLR_plant 525 872 IPR017103 -
Cma01g01234 899 PIRSF IGluLR_plant 1 509 IPR017103 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01234 - - - csv:101209708 1320.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01234 Cma09g00831 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01234 Cma-Chr1:8887488 Cma12g00660 Cma-Chr12:3530829 3.02E-129 dispersed
Cma01g01234 Cma-Chr1:8887488 Cma09g00831 Cma-Chr9:4081071 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01234 Cma_Chr01 FPKM 2.760295 2.605994 6.327448 5.940579 6.467159 6.26818 6.422523 1.7645 1.273206 1.689879