Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01244 ATGTCGCATTCTCTCAATCCCATTTCGGACTATGACCATCTCTCCGATCGGTTTCGTGATTCCCTCAGTTGTGAAGCTAACAAGCCTGATTTTCGCGAGCTAGATCTGGGTTCCCCTGTTTCGCCATTACGGACTCGGAACCAGACTGGTGGCGGCCCTGCTGCCAGTACTAGTTCGAGCTCGTCCGGGTCGGTTTCTGGCCGGAATGCAACGAACCCACTTGCGAAAAGATCTGATTCGGGTCCTAATAATCATTCCGGTGAACTCTCTGGGTCTAGCGAGAGCAGCCCAACTGCGGCGGAGAGCCTCCGATCCATTGGTACACCTAGGAATTTCAAGTCTGGTCATACTAGATCCGATTCTGGATCGAGTCATCCGTTAATCTATTCGGGTCAGTCTCAAACCTCTGTTACTTCCCCATCGAATGTGCTTCCCACCGGCAATATTTGCCCTTCTGGAAGGGTTTTGAAAACGAGCATGCCGTCGACCAACCGGAGTTCGAGATCCGATGTTTTGGGTTCTGGGTCGGGAAATTACGGCCATGGGAGTATAATGCGGGGCCTCGGCGGTGTCAAAACCGGCGGCGTTGAATCGGGTAGTAATGTTAGTTCGAGGGCCGGTTGTGGTGGTGGTGGTGGTGACTCGCTGAAGAGGGCGAAACAGAGTGGGGATCCAGAGGAGTTGAAGAGAGCTGGAAATGAACAATACAAAAAGGGGCATTTTGCTGAAGCTTTGAGTCTCTATGATCGAGCCATTGCAGTTTCCCCGGTCAATGCAGCTTACCGGAGCAACCGAGCGGCTGCCTTGACCGGCCTCGGTCGCCTTGGCGAGGCGGTAAGCGAGTGCGAGGAGGCGGTAAGATTGGATCCCAATTATGTGAGGGCTCATCAGCGTTTGGCATCCTTGTTTCGTAGGTTAGGACATGTAGAGAATGCCAGGAAACATCTTTGTTTTCCCGGCGTTCAGCCCGATCCGAGTGAGCTGCTGAGACTGCAGACAGTCGAAAGGCATATAAGCAAATGCAGGGATGCCCGTCGACTCAAAGATTGGCGAAGCCTATTGAAGGAGGCCGATGCTGCGATTGCTGGTGGAGCTGATTCTTCGCCTCAGCTGTTTATGAGTAAAGTGGAAGCTCTTTTAAAGCTTCATCAGATTGAAGATGCTGAAGCCAGCTTATTAAGCATTCCGAAGTTACATCCATCGATTAATGCGTGCTTACAAATGAAGTTTTTCGGGATGATTTCGGAAGCGTACACTCATTTCATTCATGCCCAAATCGAGATGGCGCTAGGAAGGTTTGAGAATGCAGTTACGGCTGCTGAGAAAGCTGCACAGATTGATCCTCGAAATGTAGAAGTGGCAATGCTGCTTAGTAACGTGCGGTCGGTTGCACGAGCTCGTACTCGAGGCAACGATCTCTTTAAATCAGAAAGGTATACAGAAGCTTGCTCAGCATATGGGGAAGGACTTAAGCTTGACCATTCGAACTCGGTCCTCTACTGCAATCGAGCAGCCTGTTGGTTTAAACTCGGGATGTGGGAGCGGTCTATCGAAGACTGTAATCAAGCGTTACTTATCCAACCGACATACACGAAGGCCCTCCTTCGAAGGGCTGCTTCAAATAGTAAGCTCGAAAGATGGGAGGACGCTATACGAGATTATGAAGCTTTAAGGAGGGAACTTCCAGATGACAATGAAGTTGCTGAATCTCTTTTTCATGCTCAAGTCGCGTTAAAGAAATCCCGTGGTGAAGAAGTTCATAATCTGAAGTTCGGTGGTGAAGTCGAGGTGGTTTCCAGCATAGATCAGTTCCGAGCTGCGATATCGTTCCCTGGCGTCACTGTTGTTCATTTCAAAGTAGATTCCGATATACAATGCAAGCAGATATCGCCGTTCGTCGACATCCTTTGTCGTCGCTATCCTTCCATTAATTTCCTCAAGGTGAATCTGGAAGATAGTCCAGCAATTGCAGATACCGAAAACGTAAGGATCGTACCGACGTTCAAGATTTACAAAAGTGGAAACCGAGTAAAAGAGATCATATCTCCGACTCACGACATGTTAGAGTACTCAGTGAGGTATTATAGCTTCTTATAG 2097 49.07 MSHSLNPISDYDHLSDRFRDSLSCEANKPDFRELDLGSPVSPLRTRNQTGGGPAASTSSSSSGSVSGRNATNPLAKRSDSGPNNHSGELSGSSESSPTAAESLRSIGTPRNFKSGHTRSDSGSSHPLIYSGQSQTSVTSPSNVLPTGNICPSGRVLKTSMPSTNRSSRSDVLGSGSGNYGHGSIMRGLGGVKTGGVESGSNVSSRAGCGGGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAVSPVNAAYRSNRAAALTGLGRLGEAVSECEEAVRLDPNYVRAHQRLASLFRRLGHVENARKHLCFPGVQPDPSELLRLQTVERHISKCRDARRLKDWRSLLKEADAAIAGGADSSPQLFMSKVEALLKLHQIEDAEASLLSIPKLHPSINACLQMKFFGMISEAYTHFIHAQIEMALGRFENAVTAAEKAAQIDPRNVEVAMLLSNVRSVARARTRGNDLFKSERYTEACSAYGEGLKLDHSNSVLYCNRAACWFKLGMWERSIEDCNQALLIQPTYTKALLRRAASNSKLERWEDAIRDYEALRRELPDDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEVVSSIDQFRAAISFPGVTVVHFKVDSDIQCKQISPFVDILCRRYPSINFLKVNLEDSPAIADTENVRIVPTFKIYKSGNRVKEIISPTHDMLEYSVRYYSFL 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8963556 8966867 + CmaCh01G012440.1 Cma01g01244 286937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01244 698 MobiDBLite consensus disorder prediction 41 176 - -
Cma01g01244 698 Pfam Tetratricopeptide repeat 499 530 IPR001440 GO:0005515
Cma01g01244 698 SMART tpr_5 497 530 IPR019734 GO:0005515
Cma01g01244 698 SMART tpr_5 417 450 IPR019734 GO:0005515
Cma01g01244 698 SMART tpr_5 225 258 IPR019734 GO:0005515
Cma01g01244 698 SMART tpr_5 531 564 IPR019734 GO:0005515
Cma01g01244 698 SMART tpr_5 463 496 IPR019734 GO:0005515
Cma01g01244 698 SMART tpr_5 259 292 IPR019734 GO:0005515
Cma01g01244 698 Coils Coil 537 557 - -
Cma01g01244 698 MobiDBLite consensus disorder prediction 24 235 - -
Cma01g01244 698 SUPERFAMILY TPR-like 224 453 IPR011990 GO:0005515
Cma01g01244 698 Pfam Thioredoxin 602 684 IPR013766 -
Cma01g01244 698 MobiDBLite consensus disorder prediction 219 235 - -
Cma01g01244 698 Pfam Tetratricopeptide repeat 231 291 - -
Cma01g01244 698 Gene3D Glutaredoxin 589 695 - -
Cma01g01244 698 Gene3D Tetratricopeptide repeat domain 223 583 IPR011990 GO:0005515
Cma01g01244 698 SUPERFAMILY Thioredoxin-like 500 690 IPR036249 -
Cma01g01244 698 ProSiteProfiles TPR repeat profile. 417 450 IPR019734 GO:0005515
Cma01g01244 698 CDD TRX_family 602 681 - -
Cma01g01244 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 11 695 IPR044534 -
Cma01g01244 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 11 695 - -
Cma01g01244 698 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Cma01g01244 698 Pfam Tetratricopeptide repeat 420 450 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01244 - - - csv:101208569 1198.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01244 Cma09g00815 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01244 Cma-Chr1:8963556 Cma11g01885 Cma-Chr11:12497605 0 dispersed
Cma01g01244 Cma-Chr1:8963556 Cma09g00648 Cma-Chr9:3078336 5.01E-127 wgd
Cma01g01244 Cma-Chr1:8963556 Cma09g00815 Cma-Chr9:4002602 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g122 . . . . . . . . . . Cma01g01244 Cma09g00815 Car01g01065 Car09g00731 . Cpe06g00508 Cpe02g00673 Bhi09g03502 Tan01g4331 . . . Mch11g1016 . Cla11g01716 Cam11g1785 Cec11g1806 Cco11g1811 Clacu11g1944 Cmu11g1755 Cre11g2163 Cone6ag0188 Cone9ag0214 . . Lsi04g02020 Csa04g02292 Chy07g00029 Cme07g00542 . . . . . . . . . Cmo01g01299 Cmo09g00809 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005247 2 2 2 1 2 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01244 Cma_Chr01 FPKM 13.122621 13.582014 4.338864 3.948148 21.694582 18.635559 21.300083 0.496921 0.634909 0.767706