Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01250 ATGGCTGACATCAAAACCCTAGGCATTCTCCAGGACATCGAATCCCTTGTCGCCGATAAGCTTCAAGTGGTTTCCTACAAGTGGCTAAGTCGCAGTTATTTGATATCTTCGGATACTGCAAAGAGGTTGCTTCAGGAATTTGTTGAAAAGCATGAAAGTGGATTACAAGTGGTCTATGCCTTGTCCGGATGGTTGAAAAATGACCCCCCAAGCTACCATATTAGGCTTGTTTCTGATTCAAAACTTCCTGAAGCAAAGCAAGATTTTGATGGCACCTGCTCGATTCAAGTTTATAGTGTTCAAGCTTCCATTCCAAAGGATCCAGCCGCACTGTGGAATGCTGAATTCGTTCAGGCAGAAGAGCTCTTCAAGCAGCCCTTCACTGTTGACAATTGTTTGCGAGATAACAGGTTCTGTGGAATTTCCAATTCCTATGTCAAGCGCAGCATTGATGAGATACCTGCAAGCGTTGCAGCTCCTCAGCCAAGAAGTGCAGTGGGTGCAGAATCAACAAAAAAGAATGAATCATGTCAAAATACTACCGTTCCTCAACCTCAAAAAAGTGAAATGCACAAAGTTAGTCCTAATGTTGGTCTACAGAATCCCCCTGTGGTCAAAGAAGTTGAAGGTGAAAATAACAGTACAGGGTCATTTCATCAGACCTCCAAGCCAATTGCAGTTAAAGAAAAAGTTGCTTCCTTACCTGCTAAAAAGAAGAAACCTCAAAGTGATAAAACCTCTTCCAGTACTGAAAGTTCATTAGCAAACTTGTGGGGACGTGTCCCTACTAAGTCCAAGCTCAGTGACAACCATGAAAATGTGAAGCATGCCAATGCAAACCCTACTGTATCGAGTGCAGAGGCACAAATTTGCGCACATGAAGGACTACAGAGTGACAACAGTGATGATGACGATCAAAATGTAAATATCAAGAGGACCTCCAATGAAGGTGGAAGAAAAAGGAGGGTGGTTATTGATTTCTCAGATGATGAAGATTTTGAAGATGCAGTCAGTTTAGCATCACCTGAAAATCCGAAGGATCAGTCATGTTTAGATCTGAAGCAAAACACTGAATTACATGAAGAGAAAGCTCATTTGAACAATGACAGACAACAGAACGGTGAACTGAAAATGGAGGAGGAAAAGACATGTGTATCGAAGCAATCCTTAGCAGAAGATAAACATCAGAATTCCTCCCTTGCAGTGAAAAACGAGGTTTGTGCCCATGAAAATGTTTCTAATAATAGAGAGAAACCAACAGATGCTGCTCCTGCTTCACCCAAGAGGAGAAAAGTATTGAGGACAAGAATTGATGAGCGTGGGAGAGAAGTAAATGAGGTGGTTTGGGAGGGTGAAGAGCAGGAACAGAAGAAGGATGATGTCTCTTCAACAAAGAAATCTGATCATAAAGCAGCAGAGACTACTACGAACAGGCCTCCTCCGGCCAAGAAGTCACCAGCTTTGGGCAATGGTGGTGCAAATCCAGCAGGGAAAGCAGGAGCCAAGAAAGCTGGAAATGCGACTGGTCCCAAACAAGGAAATATTCTTTCTTTTTTCAAGAAGATTTGA 1569 42.64 MADIKTLGILQDIESLVADKLQVVSYKWLSRSYLISSDTAKRLLQEFVEKHESGLQVVYALSGWLKNDPPSYHIRLVSDSKLPEAKQDFDGTCSIQVYSVQASIPKDPAALWNAEFVQAEELFKQPFTVDNCLRDNRFCGISNSYVKRSIDEIPASVAAPQPRSAVGAESTKKNESCQNTTVPQPQKSEMHKVSPNVGLQNPPVVKEVEGENNSTGSFHQTSKPIAVKEKVASLPAKKKKPQSDKTSSSTESSLANLWGRVPTKSKLSDNHENVKHANANPTVSSAEAQICAHEGLQSDNSDDDDQNVNIKRTSNEGGRKRRVVIDFSDDEDFEDAVSLASPENPKDQSCLDLKQNTELHEEKAHLNNDRQQNGELKMEEEKTCVSKQSLAEDKHQNSSLAVKNEVCAHENVSNNREKPTDAAPASPKRRKVLRTRIDERGREVNEVVWEGEEQEQKKDDVSSTKKSDHKAAETTTNRPPPAKKSPALGNGGANPAGKAGAKKAGNATGPKQGNILSFFKKI 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9004048 9008809 + CmaCh01G012500.1 Cma01g01250 286943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01250 522 MobiDBLite consensus disorder prediction 207 222 - -
Cma01g01250 522 MobiDBLite consensus disorder prediction 410 473 - -
Cma01g01250 522 MobiDBLite consensus disorder prediction 357 389 - -
Cma01g01250 522 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 7 148 IPR041913 -
Cma01g01250 522 MobiDBLite consensus disorder prediction 357 522 - -
Cma01g01250 522 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 1 521 IPR019038 GO:0005634|GO:0006260|GO:0043625
Cma01g01250 522 MobiDBLite consensus disorder prediction 158 322 - -
Cma01g01250 522 MobiDBLite consensus disorder prediction 167 195 - -
Cma01g01250 522 MobiDBLite consensus disorder prediction 297 322 - -
Cma01g01250 522 MobiDBLite consensus disorder prediction 390 404 - -
Cma01g01250 522 Pfam DNA polymerase subunit Cdc27 23 521 IPR019038 GO:0005634|GO:0006260|GO:0043625
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01250 K03504 POLD3; DNA polymerase delta subunit 3 - csv:101202933 781.556
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g90 . . . . . Bpe08g00987 . . . . Cma01g01250 . . . . . . . . . . . . . . . . . . . . Cone6ag0201 Cone9ag0232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010815 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01250 Cma_Chr01 FPKM 4.957623 5.360852 4.338897 4.425309 10.940636 11.744029 10.560904 3.24285 3.91257 3.310043