Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01260 ATGGATTTGAAGAATGTTGGTGTTCATGTTCTTGTTCTTGGGTTGCTGTATTTCAACTGCTTCGTTGAATTTGGATCTGATGCACAACCTCTGCCCCAACAAGAAGTGAGCGCCCTTCAAGCAATTTCAGAAGAGCTGAAGAATTTAAGTTGGAATGTCCACCAGAATTCTTGCAGTAATGGAGACGGATTTTCTAACAGACTTATCAGTGCTACCAATATCAGAGAGGTGAATTGCAGTTGTAATTCATCTACTTGCAGCATCCGCAGCATTCGGCTGAAGGGTCTCAATCTAACCGGAGTTCTACCGGCTGCATTTGCGAATCTTACTCGACTGCAGTACTTAGATCTGAACGGCAATTTGATAAATGGATCAATTCCTAAGGAGTTTGGTCGCATTCCTCTCGTTACTTTTTTTATGGTGGGAAACCGGCTTAGTGGTCACATTCCTCAAGAAATTGGTGATATTGCTTCGCTTCAGGAACTGAACTTGGAAAATAATGAGCTTGAAGGAAATCTTCCTGAGAGCTTCGGCAAACTGAGCCAGTTGCGAAGATTACTTCTTTCTTCAAATCATTTCACAGGCTCCATTCCTGATTCTTATGGGAACTTGAAGAACATGACCGATTTTTGGATAGATGGAAATGATTTATCTGGAAGACTACCTGAATTTATTGGCAACTGGACTAAACTTTATAAACTTCGTATTCAAGGAACTTCCATGGAGAATCCCATTCCTCGAGCCATATCCGAGTTGGAAAACTTAACCGAATTGATGATAACTGATGTGAAAGGGCCATCCACAAACTTTCCTGATTTGACTCGATTGAAACGTTTACAAATACTGGTCTTAAGAAATTGCCTAATCGAGGATCGTATCCCACCATACCTTGGACAGATTAGTACACTAAGAACTTTAGATCTAAGCTTCAACAGATTAAGTGGTCCAATTCCAGACACATTTCAAAATCTCGTTAATGCCTTCAAATTTTTCATGTTCCTTAGTAACAACTCGTTGAGCGGTCAAGTACCGAGCTGGATTGTGAACAACCAAAAGTACATAGATTTATCTTACAACAATTTTACAGGCCCGCCTGTTTCCAGTTGTCCACAGTCTAACAATGTGAACTTGGTTTCCAGTTATTCAACAGCCTTGAATAATACTGATGCTTGGTGTCTAGTGAAGGGTTTCCCTTGCCCAACTGAAGCTCGATATGATTCATTGTTCATAAATTGTGGAGGAGAAAGAATAAAGATTGATGGCAAGGAATACGAAAATGACGAGGCTTTGGTTGGCAAATCCAATTTTTTTTCTCCCTCTGAAAGATGGGGTTACAGCAGTACTGGTGCTTTCTTGATAAATACTGTTGACGGCCCTCCTTACAAAGTTAAAAGTAGCAATGAGTCTGTTTCAGGTGTCTATGCCACAGCTCGTCTTGCACCTATTTCGCTCAAGTACTACGGATTTTGCTTGCGAAGTGGCAGTTACAATGTGAAGCTTCACTTTGCTGAAATTATGTTTACTGCAGACGAAATCGGAAGGCGCATATTTGATATCTCAATTCAAGGAAAGTTGGTAAAAGAAAATTTTAACATAGCGGAGGAAGCTGGAGGGGTGAATAAGAGTTTTTTTCTGGAAGAGTCTAATATTCTAGTAACTAGCAATACTCTTGAAATCCACTTATATTGGGGTGGTAAAGGAACAACTGCGATCCCAAACGCAGGGGTGTATGGACCTCTAATATCTGCAATTACAGTGACACCCAACTTTGACGTGGAAACTAGAGAGCTATCAGCTGGAGCTATTGCCTGCATTGTTGTTGGTACTTTTGTGCTGTTCGTATTTATATTGGTTGTACTTCGAAGGAAAGGTTACTTAGGTGGGAAGGAAACTGAAGACAATGAATTTCGGGCCCTAAAGTTACAAACGGGTTATTTTAGCTTAAGACAAATCAAAACAGCAACCAACAACTTTGACTTGGAACATAAGATAGGCGAGGGAGGTTTTGGTCCTGTCTACAAGGGAGTGCTCTTGGATGGTACTCCAATTGCTGTAAAGCAACTATCCTCTAAATCAAGCCAAGGGAACCGCGAATTCATCAATGAAATAGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTGTATGGTTGCTGTATCGAAGGAAACCAACTGTTGCTTATTTATGAGTATCTCGAGAACAATTGCCTTGCCCGCGCACTTTTTGGGCCCGAGGAGCACTTACTACATTTGGAATGGCCAGCAAGAATGAATATATGCTTGGGAATAGCAAAGGGGTTGGCTTTCCTTCATGAAGAATCTAGATTGAAAGTTGTTCATAGAGATATAAAAGCTACTAATGTTCTGCTTGATAAAAATTTGAACGCTAAGATCTCAGACTTTGGGTTGGCTAAGCTTAATGAAGAGGAGAATACTCATATCAGCACAAGAATTGCGGGCACAATAGGTTACATGGCTCCGGAATATGCAACGAGGGGTTATTTAACTGATAAAGCCGATGTTTACAGTTTCGGAATTGTGGCCTTAGAAATTGCCAGTGGAAAAAGTAACACAAATTACAGATCACATGAGAAGTTTGTTTATCTTCTTGATTGGGGTCTGGACTGTTTGTACAGCCTTCTGTTTCCTAGGACCTCTGTGACTAATGAGTGTTTGAAAAGTCTATGCCAAATTTTAGTATTCTGGGACATGGATTTTTGTGCTTGGGCATTGAGGAGTGTTCGTGTTCATGTTCTTGTCAGTGGGTTGCTGCTTTTCAGCTACATCTTGGAGTTTGGAACCGATGCCCAACTTTTACCTGAACAAGAAGTGAGAGCCCTTCAAGAAATATCTGCTAAGCTAAAGAACTTAAATTGGAAGGTTCACCAAAATTCTTGCATCAATGGCGACGGCTTTTTCAATGTATTTACCAACTTTACTCATATGAGAGAGGTCAACTGCACTTGTAATACAACTTGCAGAGTCACCAGCATACGGCTGAAGGGTTTCAATCTAGTTGGAAATCTACCTGTAGCATTTGCAAATCTAACTCAACTACGAGTGTTAGATCTCACTTATAATCTTATATCTGGATCAATTCCTAGGGAATTTGCTCGCATTCCTCTTGTTACTTTTGCCATGATAGGAAACCAACTTAGTGGTCAGATTCCTCCAGAAATTGGAGATATTACTTCACTTGAAGAACTACTTCTTTCTTCCAATAAAATCACCGGGGCGATCCCAAAATCTTTTGGAAACTTGAGGAACTTGACTGAATTTCGGATGGATGGGACTAACATATCAGGGAAGATACCTGATTTTATTGGCAACTGGACCAATCTTAAAATTCTGTATATTCAAGGCACTTCATTGGAGAACCCCATTCCTGCTGCCATATCCGAGTTGAAAAACTTAACCGACCTGATAATAAGTGATTTGAAGGGACCTCAGATAAGTTTCCCCAATCTGACTCAAATGACATCTTTACAAACATTGGTCTTAAGAAATTGCTTAATCGTGGGTCGTATCCCTGAATATATCGGACAGTTTAACGTTTTAAGAATATTAGATCTAAGCTTCAACAGATTAAGTGGTTCAATTCCAAAGACATTTGAAAATCTTTTGTTGGTCCATAAAGTTCAGTTCATGTTTCTGACTAACAACTCCTTAAGCGGCCAAGTACCGGAATGGATTGTGAACGCTGGCAACAGTGGAAGGAACATGTTAAAGATTTATCTTACAACAATTTTACAGAGTTGCCGAACTTCAGTTGTACACAGTCTAATAGTGTGTAAGCCACTTGATATCTACCCATTCCTCTGTGATGATTGGTGCTTGATGAAGGATCTCCCTTGCCCTACAGAGAATCGATTTCATTCGTTGTTCATTAATTGTGGAGGACGAAGCATGGAGTTGAATGGCAGTGAATACAAAGCGGATGATACTCAGGGTGGTTCATCATCGGCTAGATTCTTTTCTTCAGCAGAAAGATGGGGTTACAGTAGTACTGGTCTGTACTTGAGAAATGAACATCTTCCTTACATAGTATCAACTTCAAATAGCAATGGCAGAGCTGCTTCAAGCATCTATGCAACAGCTCGACTCTCACCACTTTCTCTCAAATATTATGGATTTTGCATGAGAAATGGAAGTTACAATGGAAACTTGATTAGAAAAGATTTTAACATAATGGAGAATGCTGGAGGTGTTGGTAAGAGCTTTATCTTGGAAGAGCCTAATATTGTAGTGAATGGAAGCACTCTTGAGATCCACTTATATTGGGCTGGTAAAGGAACAGATTCCATTCCAGTGATAGGGGTGTATGGACCTCTAATATCTGCAATCACTGTGACACCAAACTTTGATGTGGGCACTAATGTGGAAAATGAAACTAGAGGGCTATCAGCTGGAGCTATTGCTGGCATTGTTATCGGTATTTTCTTGTTCGTCGTTTTTGTATTGGCTGTTCTTCGATGGAAGGGTTACTTAGGTCGAAAGGAAGCGGAAGACGATGAACTTCGGGATCTAAAATTACAGACAGGTTATTTCAGTTTAAGACAAATCAAAGCAGCCACCAACAACTTTGACTCGACACATAAGATAGGCGAGGGAGGCTTTGGTCCTGTCTACAAGGGAGTTCTGTCGGATGGCACTTCAATTGCTGTAAAGAAGCTATCCTCTAAATCAAAGCAAGGGAACCGTGAATTCATCACTGAAATCGGCATGATATCAGCGTTACAACATCCGAATCTCGTAAAGCTCTATGGTTGTTGCATTGAAGGAAGCCAATTAATGCTTATATATGAGTATCTAGAGAACAATAATCTTGCTCGTGCCTTATTTGACCCTGAGAAGCACTCACTCCATTTGGATTGGCCAATAAGAATGAAGATTTGCTTGGGAATAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTCTATTGAAAGTTGTTCATAGAGATATAAAAGCTACCAACGTGCTACTTGATAAAAGCCTAAATGCTAAGATTTCTGACTTTGGATTGGCTAAGCTTCATGAAGAGGAGAACACCCATATCATCACAAGAATTGCAGGCACAATTGGATACATGGCGCCCGAGTACGCAACGAGGGGTTATCTGACTCATAAAGCTGATGTTTATAGCTTTGGTATCGTGGCTCTAGAGATCGTTAGTGGGAAAAGTAACACGAGTTGCATGCCAAAAGAGGATTTTGTGTTTCTTCTTGACTGGGCTTTCGTTCTACAAGAGGAAGGGAACTTATTAGAACTCGTGGACCCGAATCTTGGCTCAAATTACTCGAAAGAGGAGGTCGTGAGAATGCTTCATATAGCTCTCTTATGCACAAACCTGTCTCCAAGTCTTAGACCAACCATGTCTTCTGTGGTTAGTATGCTTGAAGGTAAACTCAAACTCCCTGTCGAAGTAAGGAACATGAAGCGCAACACAAGTGAGCGTGATGCAAGGTTCAAAGCCTCTGAGAAGCTGTCACGGGACAGCCTAACAAGCATTTCTGCATCGTCACAATCCATTGTTCAGATGCCAAGAAGCATGTCATTCGATGGGATATACATTGGCTCATCGTCTTCGTCTACTCGAAACAAAGACGAGACCCGAAAGTATTCTTCAACTAGAAGTCTTCTTGAAGATTGA 5658 40.65 MDLKNVGVHVLVLGLLYFNCFVEFGSDAQPLPQQEVSALQAISEELKNLSWNVHQNSCSNGDGFSNRLISATNIREVNCSCNSSTCSIRSIRLKGLNLTGVLPAAFANLTRLQYLDLNGNLINGSIPKEFGRIPLVTFFMVGNRLSGHIPQEIGDIASLQELNLENNELEGNLPESFGKLSQLRRLLLSSNHFTGSIPDSYGNLKNMTDFWIDGNDLSGRLPEFIGNWTKLYKLRIQGTSMENPIPRAISELENLTELMITDVKGPSTNFPDLTRLKRLQILVLRNCLIEDRIPPYLGQISTLRTLDLSFNRLSGPIPDTFQNLVNAFKFFMFLSNNSLSGQVPSWIVNNQKYIDLSYNNFTGPPVSSCPQSNNVNLVSSYSTALNNTDAWCLVKGFPCPTEARYDSLFINCGGERIKIDGKEYENDEALVGKSNFFSPSERWGYSSTGAFLINTVDGPPYKVKSSNESVSGVYATARLAPISLKYYGFCLRSGSYNVKLHFAEIMFTADEIGRRIFDISIQGKLVKENFNIAEEAGGVNKSFFLEESNILVTSNTLEIHLYWGGKGTTAIPNAGVYGPLISAITVTPNFDVETRELSAGAIACIVVGTFVLFVFILVVLRRKGYLGGKETEDNEFRALKLQTGYFSLRQIKTATNNFDLEHKIGEGGFGPVYKGVLLDGTPIAVKQLSSKSSQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNCLARALFGPEEHLLHLEWPARMNICLGIAKGLAFLHEESRLKVVHRDIKATNVLLDKNLNAKISDFGLAKLNEEENTHISTRIAGTIGYMAPEYATRGYLTDKADVYSFGIVALEIASGKSNTNYRSHEKFVYLLDWGLDCLYSLLFPRTSVTNECLKSLCQILVFWDMDFCAWALRSVRVHVLVSGLLLFSYILEFGTDAQLLPEQEVRALQEISAKLKNLNWKVHQNSCINGDGFFNVFTNFTHMREVNCTCNTTCRVTSIRLKGFNLVGNLPVAFANLTQLRVLDLTYNLISGSIPREFARIPLVTFAMIGNQLSGQIPPEIGDITSLEELLLSSNKITGAIPKSFGNLRNLTEFRMDGTNISGKIPDFIGNWTNLKILYIQGTSLENPIPAAISELKNLTDLIISDLKGPQISFPNLTQMTSLQTLVLRNCLIVGRIPEYIGQFNVLRILDLSFNRLSGSIPKTFENLLLVHKVQFMFLTNNSLSGQVPEWIVNAGNSGRNMLKIYLTTILQSCRTSVVHSLIVCKPLDIYPFLCDDWCLMKDLPCPTENRFHSLFINCGGRSMELNGSEYKADDTQGGSSSARFFSSAERWGYSSTGLYLRNEHLPYIVSTSNSNGRAASSIYATARLSPLSLKYYGFCMRNGSYNGNLIRKDFNIMENAGGVGKSFILEEPNIVVNGSTLEIHLYWAGKGTDSIPVIGVYGPLISAITVTPNFDVGTNVENETRGLSAGAIAGIVIGIFLFVVFVLAVLRWKGYLGRKEAEDDELRDLKLQTGYFSLRQIKAATNNFDSTHKIGEGGFGPVYKGVLSDGTSIAVKKLSSKSKQGNREFITEIGMISALQHPNLVKLYGCCIEGSQLMLIYEYLENNNLARALFDPEKHSLHLDWPIRMKICLGIAKGLAYLHEESLLKVVHRDIKATNVLLDKSLNAKISDFGLAKLHEEENTHIITRIAGTIGYMAPEYATRGYLTHKADVYSFGIVALEIVSGKSNTSCMPKEDFVFLLDWAFVLQEEGNLLELVDPNLGSNYSKEEVVRMLHIALLCTNLSPSLRPTMSSVVSMLEGKLKLPVEVRNMKRNTSERDARFKASEKLSRDSLTSISASSQSIVQMPRSMSFDGIYIGSSSSSTRNKDETRKYSSTRSLLED 1885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9059597 9082078 - CmaCh01G012600.1 Cma01g01260 286953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01260 1885 ProSiteProfiles Protein kinase domain profile. 1530 1805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01260 1885 SUPERFAMILY L domain-like 981 1234 - -
Cma01g01260 1885 SMART serkin_6 658 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01260 1885 SMART serkin_6 1530 1801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01260 1885 CDD STKc_IRAK 1536 1803 - -
Cma01g01260 1885 Gene3D - 407 589 - -
Cma01g01260 1885 Gene3D - 1294 1388 - -
Cma01g01260 1885 SMART LRR_sd22_2 300 326 - -
Cma01g01260 1885 SMART LRR_sd22_2 1065 1091 - -
Cma01g01260 1885 SMART LRR_sd22_2 1018 1033 - -
Cma01g01260 1885 SMART LRR_sd22_2 1185 1211 - -
Cma01g01260 1885 SMART LRR_sd22_2 109 130 - -
Cma01g01260 1885 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 289 353 - -
Cma01g01260 1885 PANTHER - 1071 1390 - -
Cma01g01260 1885 Gene3D Ribonuclease Inhibitor 267 380 IPR032675 -
Cma01g01260 1885 MobiDBLite consensus disorder prediction 1868 1885 - -
Cma01g01260 1885 Gene3D Ribonuclease Inhibitor 32 266 IPR032675 -
Cma01g01260 1885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Cma01g01260 1885 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 291 - -
Cma01g01260 1885 SMART LRR_typ_2 300 323 IPR003591 -
Cma01g01260 1885 SMART LRR_typ_2 109 132 IPR003591 -
Cma01g01260 1885 SMART LRR_typ_2 180 203 IPR003591 -
Cma01g01260 1885 SMART LRR_typ_2 1065 1088 IPR003591 -
Cma01g01260 1885 SMART LRR_typ_2 1185 1208 IPR003591 -
Cma01g01260 1885 SMART LRR_typ_2 1018 1041 IPR003591 -
Cma01g01260 1885 SMART LRR_typ_2 156 179 IPR003591 -
Cma01g01260 1885 PANTHER - 1473 1864 - -
Cma01g01260 1885 SUPERFAMILY Protein kinase-like (PK-like) 1514 1815 IPR011009 -
Cma01g01260 1885 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 380 880 - -
Cma01g01260 1885 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 975 1076 - -
Cma01g01260 1885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1652 1664 IPR008271 GO:0004672|GO:0006468
Cma01g01260 1885 SUPERFAMILY Protein kinase-like (PK-like) 641 885 IPR011009 -
Cma01g01260 1885 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1473 1864 - -
Cma01g01260 1885 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1071 1390 - -
Cma01g01260 1885 ProSiteProfiles Protein kinase domain profile. 658 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01260 1885 MobiDBLite consensus disorder prediction 1862 1885 - -
Cma01g01260 1885 Pfam Protein tyrosine and serine/threonine kinase 660 869 IPR001245 GO:0004672|GO:0006468
Cma01g01260 1885 Pfam Protein tyrosine and serine/threonine kinase 1533 1800 IPR001245 GO:0004672|GO:0006468
Cma01g01260 1885 Gene3D Transferase(Phosphotransferase) domain 1 734 903 - -
Cma01g01260 1885 Gene3D Transferase(Phosphotransferase) domain 1 1606 1826 - -
Cma01g01260 1885 Pfam Leucine Rich Repeat 303 324 IPR001611 GO:0005515
Cma01g01260 1885 Pfam Leucine Rich Repeat 1188 1209 IPR001611 GO:0005515
Cma01g01260 1885 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515
Cma01g01260 1885 Gene3D Phosphorylase Kinase; domain 1 1498 1605 - -
Cma01g01260 1885 Gene3D Phosphorylase Kinase; domain 1 626 733 - -
Cma01g01260 1885 PANTHER - 380 880 - -
Cma01g01260 1885 PANTHER - 975 1076 - -
Cma01g01260 1885 PANTHER - 289 353 - -
Cma01g01260 1885 Pfam Malectin domain 408 584 IPR021720 -
Cma01g01260 1885 Pfam Malectin domain 1388 1450 IPR021720 -
Cma01g01260 1885 PANTHER - 66 291 - -
Cma01g01260 1885 Gene3D Ribonuclease Inhibitor 940 1247 IPR032675 -
Cma01g01260 1885 SUPERFAMILY L domain-like 68 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01260 Cma-Chr1:9059597 Cma04g00663 Cma-Chr4:3376579 0 dispersed
Cma01g01259 Cma-Chr1:9056138 Cma01g01260 Cma-Chr1:9059597 2.98E-24 tandem
Cma01g01260 Cma-Chr1:9059597 Cma01g01261 Cma-Chr1:9083769 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68281 PF07714 PK_Tyr_Ser-Thr 6.00E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01260 - - cmos:111446321 1743.78