Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01261 ATGGATTTCAGGGCTTCCAATTTTTCGAATCGTGTTCGTGTTCTTGTCTTTGGGTTTCTCGTTTTCAATTTCTTTGTCGGATTTGGATCGCACGCTCAGCCTCTGCCCGAACAAGAAGTGAGAGCCCTTCAAGCAATATCCAGAGAGTTAAGGAACTTGAACTGGAATGTGCACCAAAATTCCTGCATTAATGGCGATGGATTTTCCAATAGAATCATCGACGGTACTGATATTCTGCGAGAGGTTAACTGCACTTGCACCGCCACCGATTGCAGAGTCACTAGCATTCGGCTTAAGGGCCTCAATCTAATAGGAGCTATGCCAGCGGCATTTGCAAATCTTACTCGGTTGCAACGGATCGATCTTACTCGCAATCTAATATCCGGATCAATCCCTAGAGAGTTTGCTCGGATTCCTCTTGTTGATCTATCCATGTTGGGTAATCGGCTAAGTGGTTCAATCCCTCCAGAAATTGGTGACATTGTCACACTTGAGCATCTGGTTTTGGAAAACAATCTCCTTGGAGGGAATCTTCCCGAAAGCCTCGGGAGATTGAGCCGCTTGCAAAGATTGCTTCTCAGTGCAAATAACTTCACAGGGCCGATTCCAAACTCTTATGGAAGCTTGAGGAACTTGACTGATTTTCGGATAGATGGAAATAATGTGTCAGGAAAGCTACCCGAGTTTATTGGCAATTGGACCAAACTTGAAAGACTGGATATACAAGGAACCTCGATGGAGAACCCGATTCCTCGTGGCATATCCGAGTTGAAAAACTTAACTGAATTGAGGATAACTGATTTGAAGGGACCAGCAACAAGTTTTCCCAATCTGACTCAATTGACATCTTTAGAAGAATTGGTCTTAAGAAATTGCTTAATCGAGGATCGTATTCCAGAATATATTGGAACGTTTATCAGATTAAAAACTTTAGACCTAAGCTTCAACGAATTGAGTGGTCCAATTCCAGACACATTTCAGAATCTTGCCGGAGTTACTCGGTTCTTGTTTTTGACCAACAACTCATTAAGTGGCCAAGTACCAGGCTGGATCTTGAGCAGTGAAAGGAGCATAGATTTATCTTACAACAATTTTACAGGGTCCCCAGTTTCTAGTTGTCAACAGTCTGATGTGAACTTGGTTTCAAGTTATTCATCTGCAATGAATGAAACTGTTTCTTGGTGCTTGAGGAAGGATCTCCCTTGTCCTATAGGAACTCGATTTCATTCCTTGTTCATAAATTGTGGAGGCCAAAGAATGGAGCTTGATGGTAATGCATATGAAGAGGATGTAACTCTAGGTGGCAAGTCCAATTTCCTTTCCTTCTCAGACAGATGGGCTTATAGCAGTACTGGTGTTTTTCTGGGAAATGAGAGTGCTGATTACAGAGTAACAAGTAGCAATGCTTCTATTCCGAGCATCTACCAAACCGCTCGACTCGCACCTCTTTCGCTCAAGTACTATGGACTTTGCTTGAGAAGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTTTACTGCTGACCAAACATTCAGCAGCTTGGGAGAGCGCATATTTGATATCTCCATTCAAGGAAATTTGGTTAGAAAAAATTTTAACATATTGAAGGAAGTTGGAGTTGGTGAGAGCTTTACTTTGGAAGAGCCTAATATTTTGGTCAATGGGAGTACGCTGGAGATCCACTTATACTGGGCTGGTAAAGGAACAACGGCCATTCCAAGAAGAGGGGTTTATGGACCTCTGATATCTGGGATCTCGGTGACACCAAACTTTGATGTGGATACTGGAGCGCTATCAGCTGGAGCTATTGCTGGCATTGTTGTTAGTAGTTTTGTGTTTGTTGTGTTGGTATTGGCTGTTCTTCGATGGAAGGGTTACTTGGGTGGAAAGGACGCTGAAGACAGTGAATTGAAGGCACTAGATTTAAAGACGGGCTATTTCAGTTTGAGACAAATCAAAGCAGCCACCAAAAACTTTGACCCGACGTATAAGATAGGTGAGGGAGGTTTCGGTCCTGTATACAAGGGTGTATTGTCGGATGGTACTCCAATTGCTGTAAAGCAGCTATCCTCTAAATCAAGGCAAGGAAACCGAGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTATGGTTGTTGTATCGAAGGAAACCAATTACTGCTCGTATATGAGTATCTAGAGAACAACAGTCTTGCTCGTGCCCTTTTTGGCTCTGATGAGCAACGACTACACTTGGATTGGACGACACGAACGAAGATATGCTTGGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTGTTGAAAATTGTTCACAGAGATATAAAAGCTACCAACGTGCTACTTGATAAAATTCTGAGTGCCAAGATTTCTGACTTTGGGTTGGCTAGGCTTGATGAGGAGGAGAACACCCATATTAGCACAAGAATTGCAGGCACAATTGGTTATATGGCTCCTGAATATGCGATGAGAGGTTACTTAACTGATAAGGCAGATGTTTATAGCTTTGGAGTTGTGGCGTTGGAGATTGTTAGTGGGAAAAGCAACACAAATTACAGGCCAAAGGAGGAATTCGTTTATCTTCTGGATTGGGCTTATGTATTACAAGAGCAAGGAAACGTTCTGGAACTTGTTGATCCAAGTCTCGAGTCACATTACTCGAAAGAAGAGGTGATGCGGATGATTCATATAGCTCTCTTATGCACAAACCCGTCTCCGACTCTTAGGCCAACCATGTCCTCAGTGGTTAGCATGCTCGAAGGGAAAATTGCGGTCCAAGCACCGATCATCAAGCGCAGTGCAGTCGAGCAAGATGCAAGGTTCAAAGCCTTTGAAAGGCTGTCACAAGATAGCATATCAATGACTAGCATTTCGACATCATCACAAGGCATTCCAATGCAAAAAAGCACGTTAGTTGATGGGCTGTGGATTGACTCCTCTACTTCTACCCACAAGGAGGAGACCCAAGATTGTTCTTCAACCAGAAATCTGCTATAA 3039 42.84 MDFRASNFSNRVRVLVFGFLVFNFFVGFGSHAQPLPEQEVRALQAISRELRNLNWNVHQNSCINGDGFSNRIIDGTDILREVNCTCTATDCRVTSIRLKGLNLIGAMPAAFANLTRLQRIDLTRNLISGSIPREFARIPLVDLSMLGNRLSGSIPPEIGDIVTLEHLVLENNLLGGNLPESLGRLSRLQRLLLSANNFTGPIPNSYGSLRNLTDFRIDGNNVSGKLPEFIGNWTKLERLDIQGTSMENPIPRGISELKNLTELRITDLKGPATSFPNLTQLTSLEELVLRNCLIEDRIPEYIGTFIRLKTLDLSFNELSGPIPDTFQNLAGVTRFLFLTNNSLSGQVPGWILSSERSIDLSYNNFTGSPVSSCQQSDVNLVSSYSSAMNETVSWCLRKDLPCPIGTRFHSLFINCGGQRMELDGNAYEEDVTLGGKSNFLSFSDRWAYSSTGVFLGNESADYRVTSSNASIPSIYQTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMFTADQTFSSLGERIFDISIQGNLVRKNFNILKEVGVGESFTLEEPNILVNGSTLEIHLYWAGKGTTAIPRRGVYGPLISGISVTPNFDVDTGALSAGAIAGIVVSSFVFVVLVLAVLRWKGYLGGKDAEDSELKALDLKTGYFSLRQIKAATKNFDPTYKIGEGGFGPVYKGVLSDGTPIAVKQLSSKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGSDEQRLHLDWTTRTKICLGIAKGLAYLHEESVLKIVHRDIKATNVLLDKILSAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNVLELVDPSLESHYSKEEVMRMIHIALLCTNPSPTLRPTMSSVVSMLEGKIAVQAPIIKRSAVEQDARFKAFERLSQDSISMTSISTSSQGIPMQKSTLVDGLWIDSSTSTHKEETQDCSSTRNLL 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9083769 9092177 - CmaCh01G012610.1 Cma01g01261 286954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01261 1012 SUPERFAMILY L domain-like 84 367 - -
Cma01g01261 1012 CDD STKc_IRAK 668 935 - -
Cma01g01261 1012 Gene3D - 409 593 - -
Cma01g01261 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Cma01g01261 1012 SMART serkin_6 662 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01261 1012 Pfam Malectin domain 411 588 IPR021720 -
Cma01g01261 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 382 994 - -
Cma01g01261 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 297 - -
Cma01g01261 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 294 351 - -
Cma01g01261 1012 Gene3D Phosphorylase Kinase; domain 1 631 737 - -
Cma01g01261 1012 Pfam Leucine Rich Repeat 307 329 IPR001611 GO:0005515
Cma01g01261 1012 Gene3D Ribonuclease Inhibitor 270 382 IPR032675 -
Cma01g01261 1012 PANTHER - 71 297 - -
Cma01g01261 1012 PANTHER - 382 994 - -
Cma01g01261 1012 PANTHER - 294 351 - -
Cma01g01261 1012 SUPERFAMILY Protein kinase-like (PK-like) 647 952 IPR011009 -
Cma01g01261 1012 ProSiteProfiles Protein kinase domain profile. 662 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01261 1012 Pfam Protein tyrosine and serine/threonine kinase 667 933 IPR001245 GO:0004672|GO:0006468
Cma01g01261 1012 Gene3D Ribonuclease Inhibitor 68 269 IPR032675 -
Cma01g01261 1012 Gene3D Transferase(Phosphotransferase) domain 1 738 952 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01259 Cma-Chr1:9056138 Cma01g01261 Cma-Chr1:9083769 6.22E-29 dispersed
Cma01g01261 Cma-Chr1:9083769 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma01g01260 Cma-Chr1:9059597 Cma01g01261 Cma-Chr1:9083769 0 tandem
Cma01g01261 Cma-Chr1:9083769 Cma01g01262 Cma-Chr1:9099029 0 tandem
Cma04g00663 Cma-Chr4:3376579 Cma01g01261 Cma-Chr1:9083769 0 transposed
Cma11g00343 Cma-Chr11:1704050 Cma01g01261 Cma-Chr1:9083769 2.07E-97 transposed
Cma01g01261 Cma-Chr1:9083769 Cma18g00439 Cma-Chr18:2418041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68282 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01261 - - csv:101222014 1652.88