Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01262 ATGTTTTCGGCTCCTTCTCTCACCGTCGCTTTTTTCGTATCTCTCTGCTTCATTACTCTCGCGTCCGGCGCTACTCGCCTCCCGGTCGACGAAGTCGAGGCGCTGAGGGAGATCGGAAAGACGTTGGGGAAGACGGACTGGAATTTCGATGCAGATCCATGCGGCGGTGTTAGCAGCGGTTGGATATCGACTTCTGCGCAGTTCGACCCTAATTTTGACAATAAAGTCATCTGCAACTGCACGTTCCAGAACAATACCGTCTGTCACGTCACTAACATTCTGCTAAAGGCGCAGAACCTTCCAGGTACTCTGCCACCGCAAATAGTGAGGCTGCCTTTCCTGCAGCAACTTGATCTCACCCGCAACTTCCTCAGCGGTCCAATCCCTCCAGAATGGAGTTCCACCAAGCTCCTCAACATTTCCCTTCTTGGAAATCGATTGACGGGTTCAATACCAAAAACGATTGGAAACATCAGCACTCTTGTAGAGTTGGTCTTGGAAATGAATCATTTATCTGGAAGTCTACCTCCAGAACTTGGAAATTTGCCCAGCTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGAATTAGCGATAATAACTTCACAGGGCCAATACCAAAGTTTGTACAGAATTGGACGGCTCTTGGGAAACTAGCAATTCAGGCAAGCGGATTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAACTTAACTGATGTGAGAATCAGTGATTTGAATGGAGGTTCATCACCCTTTCCGCCCCTTAATACTTTGACAAAATTGAAAGCCTTGATATTGAGGAGTTGCAATATAGCTGGAGGGCTACCGGACAATCTTGCTGGGTTGACAGCGTTGAAAACCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGTCAGCTTTGAAGCTTTGAAAAAAGTGGATAGCATATATTTAACTGGAAACTTGCTAAATGGATCGGTGCCCACTTGGATGCTACAGCAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTACTCAGAGAAATGGCCAGAACACTGGTTGTCAATCTCGAAATTTAAACCTGTTTGCGAGCTCTTCCCAGGACAATAATTCCAGCGGAATAGTTTCATGTTTACCAAGCACTTGTGGAAGAACTTCGTACTCTCTCCATATCAACTGTGGTGGGAAGGAAGAATTAATTAACGGAACAACCACATTTGTTGCAGACATAAACACTGGCAAATCATCATTGTTTTTCCAAGGTGGAGAAAATTGGGGATTTAGTAGCACTGGTAATTTTATGGACGACGATCGCTCAACAGACGACTTTATTGCATTAAATATATCCGCTCTCTCAATGCCAAATCCTGAATTGTACGTGAGGGCACGTATTTCACCGATTTCTCTTACTTACTATGCATATTGCATGGGTAGTGGAAACTACACAGTAGGCCTCCATTTCGCTGAGATAGCGTTTACTAATGACAAATCTTATAGAAGCCTCGGCAGACGGTTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCTGCAGGTGGTATTGGCAAACCTATTGTAAAGAAATTCACCGTTCCTGTGACTAATGGTACTATAGAGATTCGCCTATTTTGGGCCGGGAAGGGGACAACTGCAATCCCTGTGAGAGGGGTTTATGGTCCTTTGATTTCTGCCATTTCGGTTGATCCTGACTTTGTGCCACCATCAGAAGGTGGAAAGGGCATATCTGCTGGTGCAGTGGTTGGAATTGTGGCTGCTGCTGTTATCTTTGTTATAATCTTTGTTCTTGGAGTCTTGTGGTGGTTAGGCTGCCTAAGAAAGAAAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTCCATTAAGACAAATTAGAGCTGCCACGAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTGTTCTTCAAGATGGCACTGTAATTGCAGTGAAGCAACTTTCTTCCAAGTCGAAGCAAGGAAATCGCGAATTTGTGAACGAAATAGGCATGATATCTGCATTGCAACACCCACATCTAGTGAAGCTTCATGGGTGCTGTATTGAAGCAAATCAACTTTTGCTAGTATACGAGTATCTGGAAAATAATAGCCTTGCTCGTGCCTTGTTCGGACCTGAAGAATTCCAACTGAAACTGGATTGGGCAACTAGGCAGAAGATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTAAAGATTGTTCACCGAGACATTAAAGCTACCAACGTTTTGCTCGATAAAAATCTCAACCCCAAGATTTCTGACTTTGGTTTGGCGAAGCTGGACGAAGAAGAAAATACACACATCAGCACGCGGGTTGCTGGAACCTTTGGGTATATGGCACCAGAATATGCCATGCGGGGCTACTTAACCGACAAAGCAGATGTTTACAGCTTTGGCATTGTGGCTTTGGAAATAGTCAGTGGTCGAAGCAACACAAGTTACCGAACCAAGGATGATTGCTTTTACCTTCTAGACCATGCTAATACTCTAAAGGAGAAGGACAGTTTACTAGAGCTCGTGGATACGCGGTTAGGCTCCGAATTCAACAAGCGAGAGGCGATGACGATGATCACTGTTGCTCTACAATGCACGAACGTCATTGCTGCAGACCGACCTACCATGTCATCCGTGGTGAGCATGCTGGAAGGGAAGATTGCCGTAAAGGAGGTGGTTTCAGATCCTAGTGTCTCAAAACAAGATATGAACGCAATGTGGAGCCAAATCTATCGGCAGAAAGGGGAAAACACGGGCGAGGGTCAGACGCAAAGTATGTCGATGGACGGTCCGTGGACTGGTTCTTCAACTACTGCCAGTGATCTCTACCCCATCAACATGGATTCTAAATACTTGGAGAATAGGAACTAA 3039 44.46 MFSAPSLTVAFFVSLCFITLASGATRLPVDEVEALREIGKTLGKTDWNFDADPCGGVSSGWISTSAQFDPNFDNKVICNCTFQNNTVCHVTNILLKAQNLPGTLPPQIVRLPFLQQLDLTRNFLSGPIPPEWSSTKLLNISLLGNRLTGSIPKTIGNISTLVELVLEMNHLSGSLPPELGNLPSLSRLLLTSNNFSGELPSSLARIASLTDFRISDNNFTGPIPKFVQNWTALGKLAIQASGLSGPIPSEIGLLTNLTDVRISDLNGGSSPFPPLNTLTKLKALILRSCNIAGGLPDNLAGLTALKTLDFSFNKITGPIPVSFEALKKVDSIYLTGNLLNGSVPTWMLQQGESIDLSYNKFTTQRNGQNTGCQSRNLNLFASSSQDNNSSGIVSCLPSTCGRTSYSLHINCGGKEELINGTTTFVADINTGKSSLFFQGGENWGFSSTGNFMDDDRSTDDFIALNISALSMPNPELYVRARISPISLTYYAYCMGSGNYTVGLHFAEIAFTNDKSYRSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPIVKKFTVPVTNGTIEIRLFWAGKGTTAIPVRGVYGPLISAISVDPDFVPPSEGGKGISAGAVVGIVAAAVIFVIIFVLGVLWWLGCLRKKSTLEQELKGLDLGTGSFPLRQIRAATNNFDAANKIGEGGFGPVYKGVLQDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLHGCCIEANQLLLVYEYLENNSLARALFGPEEFQLKLDWATRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSYRTKDDCFYLLDHANTLKEKDSLLELVDTRLGSEFNKREAMTMITVALQCTNVIAADRPTMSSVVSMLEGKIAVKEVVSDPSVSKQDMNAMWSQIYRQKGENTGEGQTQSMSMDGPWTGSSTTASDLYPINMDSKYLENRN 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9099029 9107560 + CmaCh01G012620.1 Cma01g01262 286955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01262 1012 MobiDBLite consensus disorder prediction 971 997 - -
Cma01g01262 1012 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 77 965 - -
Cma01g01262 1012 Pfam Protein tyrosine and serine/threonine kinase 671 939 IPR001245 GO:0004672|GO:0006468
Cma01g01262 1012 Gene3D Transferase(Phosphotransferase) domain 1 744 960 - -
Cma01g01262 1012 Pfam Malectin domain 406 590 IPR021720 -
Cma01g01262 1012 Gene3D Ribonuclease Inhibitor 194 264 IPR032675 -
Cma01g01262 1012 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 965 - -
Cma01g01262 1012 CDD STKc_IRAK 674 941 - -
Cma01g01262 1012 Gene3D Ribonuclease Inhibitor 265 400 IPR032675 -
Cma01g01262 1012 SUPERFAMILY L domain-like 78 362 - -
Cma01g01262 1012 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Cma01g01262 1012 Gene3D - 402 594 - -
Cma01g01262 1012 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Cma01g01262 1012 SMART serkin_6 668 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01262 1012 ProSiteProfiles Protein kinase domain profile. 668 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01262 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Cma01g01262 1012 Gene3D Phosphorylase Kinase; domain 1 635 743 - -
Cma01g01262 1012 SUPERFAMILY Protein kinase-like (PK-like) 652 960 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01262 Cma-Chr1:9099029 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma01g01261 Cma-Chr1:9083769 Cma01g01262 Cma-Chr1:9099029 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68283 PF07714 PK_Tyr_Ser-Thr 5.40E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01262 - - cpep:111787659 1674.83