Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01264 ATGTTTTTGGCTCCATTTCTCTCCCTCCTTTTACTCCTCTCTCTCTGCTTCATTTCCCTCGCTTCCGGCGCTACTCTGCTGCCCGCCGACGAAGTCGAGGCGTTGAAGGACATCGGAAAGACATTGGGGAAGACGGACTGGAATTTCGACGCCGATCCATGCGGCGGAGTTAGCAGCGGTTGGATTTCGAATTCTCCGCAGTTCGATCCTAATTTTACTAATAATGTCACCTGCAACTGCACGTTCCTGAACAATACCGTCTGTCACGTCACCTACATTAGTCTAAAGGCGCAGAGTCTTCCAGGTACTCTACCACCCCAAATAGTGAGGCTGCCTTTCCTGCAGGAACTTGATCTTACCCGCAACTATCTCAGCGGCTCAATCCCTCCAGAATGGGGTTCCACCAATCTCCTCAAAATTTCTCTTCTTGCAAATCGGTTGACGGGTCCAATCCCAGAAGCGATTGGAAACATCAGCTCTCTTGCGGAGTTGGTCCTGGAAATGAATCAATTCTCTGGAAGTTTACCCACAGAACTTGGAAATTTGACCAGCTTATCAAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGAATTAGTGATAACCACTTCACAGGGCAAATACCTAAGTTTATACAGAATTGGACGGCTCTTACAAAAATAGCTATTCAGGCAAGCGGGTTGGATGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGTGATTTGAATGGAGGTTCATCACCCTTTCCGCCCCTTAATACATTGACAAAATTGAAAACCCTGATAATGAGGAGTTGCAATATAACTGGGGTGCTACCGGACAATCTTGATGGGTTGACACTGTTGAAAACCTTAGACTTCAGCTTCAACAAAATTACTGGACCAATACCTGACAGCTTTGAAGCTTTCAAAAAAGTGGATAGCATATATTTAACTGGAAACATGCTAAATGGATCGGTGCCTGTTTGGATGCTACAGCAAGGAGAGAGCATTGATCTCTCTTATAACAAATTTACTCCAATCAATAGTGAGAACACTGGTTGTCAATCACGAAATTTAAACCTGTTTGCGAGTTCTTCCCAGGACAACAGTTCCGGTGGAACAGTTTCATGTATACCGAGCACTTGTGGAAGAACTTCGTACTCTCTCCATATCAACTGTGGTGGGAAGGAAGAATCAATCAACGGAACAACCAAATTTGATGCAGACACAAACACTGGAAAATCATCACTGTTTTTCTCAGGTGCAGAAAATTGGGGATTTAGTATCACTGGTAATTTTATGGACGACGATCGCACAACAGACGATTTTATTGCATTAAATTCATCTGCTCTCACAATGCCAAATCCTGAATTGTACGTGAGGGCACGTATTTCACCAATTTCTCTTACTTACTATGCACATTGCTTGGGTAGTGGAAACTACACAGTAAGCCTCCATTTTGCTGAGATAGTGTTTACTAATGACAAAACGTTTCGAAGCCTGGGCAGACGATTATTTGATGTCTACGTTCAGGGAAAGCTAGAGTTGAAGGATTTTAATATTGCAGATGCAGCAGGCGGTGTTGGCAAAGCTTTTATAGCTAAATTCCCTGTTTCTGTGACTAATGGTACTATAGAAATCCGGCTATATTGGTCTGGGAAGGGGACAACTGCAGTCCCTCAGAGAGGAGTTTATGGTCCTCTAATTTCAGCCATTTCTGTTGATCCTGACTTCGAGCCACCATCAGAAGAGTTGTCACCACGATCAAAAGGTGGAGGGAATGGCATATCCGCCGGTGCAGTGGTTGGAATTGTTGCTGGTATGATCGTAGTTTTCATCTTGGTTCTTGGAATATTGAGATGGAAAGGCTGCCTAAGAAAGAAAACCCCACGTGAACAAGAGGTTGCCTTTATCGATACACCTTGTTGGTTGGCATCTGTAGAGACTGTCTTAGCTGACTTACCTTCTTGGCGCTCTGCCAATGTGTTTGTGTTTTGTGCGTTGGGAAAGGTTCTTGCGACACGGTTCTGTCGATGGACCGTGGGTGCGTTTTATTGGTTTGCCTAA 2118 44.19 MFLAPFLSLLLLLSLCFISLASGATLLPADEVEALKDIGKTLGKTDWNFDADPCGGVSSGWISNSPQFDPNFTNNVTCNCTFLNNTVCHVTYISLKAQSLPGTLPPQIVRLPFLQELDLTRNYLSGSIPPEWGSTNLLKISLLANRLTGPIPEAIGNISSLAELVLEMNQFSGSLPTELGNLTSLSRLLLTSNNFSGELPSSLARIASLTDFRISDNHFTGQIPKFIQNWTALTKIAIQASGLDGPIPSEIGLLTKLTDVRISDLNGGSSPFPPLNTLTKLKTLIMRSCNITGVLPDNLDGLTLLKTLDFSFNKITGPIPDSFEAFKKVDSIYLTGNMLNGSVPVWMLQQGESIDLSYNKFTPINSENTGCQSRNLNLFASSSQDNSSGGTVSCIPSTCGRTSYSLHINCGGKEESINGTTKFDADTNTGKSSLFFSGAENWGFSITGNFMDDDRTTDDFIALNSSALTMPNPELYVRARISPISLTYYAHCLGSGNYTVSLHFAEIVFTNDKTFRSLGRRLFDVYVQGKLELKDFNIADAAGGVGKAFIAKFPVSVTNGTIEIRLYWSGKGTTAVPQRGVYGPLISAISVDPDFEPPSEELSPRSKGGGNGISAGAVVGIVAGMIVVFILVLGILRWKGCLRKKTPREQEVAFIDTPCWLASVETVLADLPSWRSANVFVFCALGKVLATRFCRWTVGAFYWFA 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9108777 9115695 + CmaCh01G012640.1 Cma01g01264 286957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01264 705 Pfam Malectin domain 405 589 IPR021720 -
Cma01g01264 705 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 77 555 - -
Cma01g01264 705 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Cma01g01264 705 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 555 - -
Cma01g01264 705 Gene3D - 401 593 - -
Cma01g01264 705 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Cma01g01264 705 Gene3D Ribonuclease Inhibitor 267 377 IPR032675 -
Cma01g01264 705 Gene3D Ribonuclease Inhibitor 193 266 IPR032675 -
Cma01g01264 705 SUPERFAMILY L domain-like 68 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01264 - - - cpep:111787659 1177.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01264 Cma-Chr1:9108777 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma01g01264 Cma-Chr1:9108777 Cma01g01265 Cma-Chr1:9117332 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g64 . . . . . . . . . . Cma01g01264 . . . . . . Bhi09g03544 . . . . Mch11g0988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000046 4 29 6 9 6 2 3 2 2 7 5 2 11 7 9 9 2 7 5 2 7 7 10 9 9 10 6 5 16 25 233
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01264 Cma_Chr01 FPKM 22.438047 26.184916 7.095058 7.352102 39.831642 38.08411 39.733505 12.421899 12.368042 13.382346