Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01265 ATGGGAGTCATGTTTTTGGGTTCATCTCGCACCCTTCATTTACTCGTCTCTCTCTGCTTCATTAGCCACGCTTCCGGCGCCACTCGGCTGCCGGCCGACGAAGTGGAGGCGTTGAAGGAGATCGGAAAGACGTTGGGGAAGACGGACTGGCATTTCAACGTCGATCCATGCGGCGGAGTTAGCAGCGGTTGGACATCGAATTCTACGCCGTTCGACACTAATTTTAATAATACCGTCATCTGCGACTGCAGGTTCCAGAACAATACCGTCTGCCACGTCACCAACATTCTTCTCAAGGGGCAGAGCCTTCCTGGTACTCTGCCGCCGCAAATAGTGAGGCTGCCTTTCCTGCAGGAACTTGATCTCACCCGCAATTATCTCAACGGCTCAATTCCTGAAGAATGGGGTTCCACCAATCTTCTCATAATTTCCCTTCTTGGAAATCGATTGACGGGTTCAATCCCAGCAGCGATTGGAAACATCAGCACTCTTGTAGACTTGGTCCTGGAAATGAATCATTTCTCTGGACGTTTACCCCCACAACTTGGAAATTTGCTCAGTTTATCTAGATTACTTCTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGTGTTAGTGATAATCACTTCACTGGGCCAATTCCTAATTTTATACAGAACTGGACGAATCTTACAAAAATAGTAATTCAGGCAAGCGGGTTGAGTGGGCCAATTCCTTCTGAAATTGGACTTTTGACAAAATTAACTGATGTGAGAATCAGTGATTTGAATGGAGATTCATCACCCTTTCCGCCCCTTAATACATTGACAAAATTGAAAACCCTGATATTGAGGAGTTGCAATATAACTGGGGTGCTACCGGACAATCTTGATGGGTTGACACTGTTGAAAACCTTATATTTAACTGGAAACTTGCTAAATGGACCAGTGCCCACATGGATGCTACAGGAAGGAGAAAGCATTGATCTCTCTTATAACAAATTTACTCCGAGCAATAGTGAGAACACTCGCTGTCAATCACGAAATTTAAACCTGTTTGCGAGCTCTTCCCAGGACAACAGTTCCGGTGGAACAGTTTCATGTCTACCCAGCACTTGTGGAAGACCTTGGTATTCTCTCCATATCAACTGTGGTGACAAGGAAGAATTAATTAACCGAACCACATTTGTTGCAGACTCAGACAGTGGCAAATCATCATTGTTTTTCCAAGGTGGAAAAAATTGGGGATTTAGTAGCACTGGTAATTTTATGGACGACGCTCGCTCCACAGACGACTTTATTGCATTAAATATATCTGCTCTCTCAATGCCAAATCCTGAATTGTACGTGAGGGCACGTATTTCACCGATTTCTCTTACTTACTATGCATATTGCATGGGTAGTGGAAACTACACAGTAGGCCTCCATTTTGCTGAGATAGCGTTTACGAATGACAAATCTTATAGAAGCCTTGGCAGACGCTTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATTGCAGATGCTGCAGGTGGTATTGGCAAACCTATTGTAAAGAAATTCACCGTTCCTGTGACTAATGGTACTATAGAGATTCGCCTATTTTGGGCCGGGAAGGGGACAACTGCAATCCCTGTGAGAGTGGTTTATGGTCCTTTGATTTCTGCCATTTCGGTTGATTCTGACTTTGAGCCACCATCAGAAGGTGGGAAGGACATATCTGCCGGTGCTGTGGTTGGAATTGTGGCTGGAATTGTGGCTGCTGTTATCTTTGTTATCATCTTTGTTCTTGGAGTCTTGTGGTGTGGAGGCTGCCTACGAAAGAAAAGCACACTTGAACAAGAATTGAAGGGTCTAGATCTAGGAACAAGTTCATTTTCATTAAGACAAATCAGAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTGTTCTTCAAGATGGCACTGTAATTGCAGTGAAGCAACTTTCTTCCAAGTCGAAGCAAGGAAATCGCGAATTTGTGAACGAAATAGGCATGATATCTGCATTGCAACACCCGCATCTAGTGAAGCTTTATGGATGTTGTGTCGAAGGAAATCAACTTTTGCTAATATACGAATATCTCGAAAATAATAGCCTTGCTCGTGCCTTATTTGGACCTGAAGAATTTCAACTGAAACTGGATTGGCCAACCAGGCACAAAATTTGTGTTGGTATAGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTAAAGATTGTTCACCGAGACATCAAAGCTACCAATGTTCTGCTTGATAAAAATCTCAACCCCAAGATTTCGGACTTCGGTTTGGCCAAGCTGGACGAAGAAGAAAATACGCACATTAGCACCCGGATTGCGGGAACCTTTGGGTATATGGCACCGGAATATGCCATGCGAGGCTACTTAACTGACAAGGCAGATGTTTACAGCTTTGGCATCGTAGTCTTGGAAATACTGAGCGGTCGAAGTAACACAATTTTCCGAACCAAGGATGATTGCTTTTACCTTCTTGATCATGCTAATACTTTAAAAGAGAGAGACCGTTTATTAGAGCTTGTCGATCCACGGTTAGGTTTGGAATACAACCAGAGAGAGGCAATGACGATCATCGATATTGCTTTCCGATGTACGAACAACACTGCTGCAGTTAGACCTACCATGTCATCAGTGGTGAGCATGCTGGAAGGGAAGGTTGCTGTGAAGGAGGTGGTTTCAGATCCTAGTGTCTCGAAACAAGAAGTGAATACGACGTGCGTTTATTACCAGAAAGGGCAAACTACAGACGAGAGTCGGATACAAAATATGTCGATAGATGGACCGTGGACTGGTTCGTCAACTACTGGCAGTGATCTCTATCCCATGCTCATGGATTCTAAATACTTGGATGATAGGAACTAG 2973 43.93 MGVMFLGSSRTLHLLVSLCFISHASGATRLPADEVEALKEIGKTLGKTDWHFNVDPCGGVSSGWTSNSTPFDTNFNNTVICDCRFQNNTVCHVTNILLKGQSLPGTLPPQIVRLPFLQELDLTRNYLNGSIPEEWGSTNLLIISLLGNRLTGSIPAAIGNISTLVDLVLEMNHFSGRLPPQLGNLLSLSRLLLTSNNFSGELPSSLARIASLTDFRVSDNHFTGPIPNFIQNWTNLTKIVIQASGLSGPIPSEIGLLTKLTDVRISDLNGDSSPFPPLNTLTKLKTLILRSCNITGVLPDNLDGLTLLKTLYLTGNLLNGPVPTWMLQEGESIDLSYNKFTPSNSENTRCQSRNLNLFASSSQDNSSGGTVSCLPSTCGRPWYSLHINCGDKEELINRTTFVADSDSGKSSLFFQGGKNWGFSSTGNFMDDARSTDDFIALNISALSMPNPELYVRARISPISLTYYAYCMGSGNYTVGLHFAEIAFTNDKSYRSLGRRLFDVYVQGKLELKDFNIADAAGGIGKPIVKKFTVPVTNGTIEIRLFWAGKGTTAIPVRVVYGPLISAISVDSDFEPPSEGGKDISAGAVVGIVAGIVAAVIFVIIFVLGVLWCGGCLRKKSTLEQELKGLDLGTSSFSLRQIRAATNNFDAANKIGEGGFGPVYKGVLQDGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCVEGNQLLLIYEYLENNSLARALFGPEEFQLKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGIVVLEILSGRSNTIFRTKDDCFYLLDHANTLKERDRLLELVDPRLGLEYNQREAMTIIDIAFRCTNNTAAVRPTMSSVVSMLEGKVAVKEVVSDPSVSKQEVNTTCVYYQKGQTTDESRIQNMSIDGPWTGSSTTGSDLYPMLMDSKYLDDRN 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9117332 9125495 + CmaCh01G012650.1 Cma01g01265 286958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01265 990 Pfam Malectin domain 384 567 IPR021720 -
Cma01g01265 990 SMART serkin_6 648 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01265 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Cma01g01265 990 Gene3D Transferase(Phosphotransferase) domain 1 724 941 - -
Cma01g01265 990 Gene3D Phosphorylase Kinase; domain 1 614 723 - -
Cma01g01265 990 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 952 - -
Cma01g01265 990 Gene3D Ribonuclease Inhibitor 33 194 IPR032675 -
Cma01g01265 990 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 80 952 - -
Cma01g01265 990 CDD STKc_IRAK 654 921 - -
Cma01g01265 990 Gene3D Ribonuclease Inhibitor 195 270 IPR032675 -
Cma01g01265 990 Gene3D Ribonuclease Inhibitor 271 362 IPR032675 -
Cma01g01265 990 ProSiteProfiles Protein kinase domain profile. 648 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01265 990 Pfam Protein tyrosine and serine/threonine kinase 651 919 IPR001245 GO:0004672|GO:0006468
Cma01g01265 990 Gene3D - 383 572 - -
Cma01g01265 990 SUPERFAMILY Protein kinase-like (PK-like) 632 946 IPR011009 -
Cma01g01265 990 SUPERFAMILY L domain-like 64 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01265 Cma-Chr1:9117332 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma01g01265 Cma-Chr1:9117332 Cma01g01267 Cma-Chr1:9127605 0 proximal
Cma01g01264 Cma-Chr1:9108777 Cma01g01265 Cma-Chr1:9117332 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68284 PF07714 PK_Tyr_Ser-Thr 1.50E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01265 - - cpep:111787659 1786.16