Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01267 ATGTTCATGTCTGGAACACTCTTTGCTTTCTTCTTCTTCTTCTTCTTCTTCATTGTTGGGATTCAATCTCAGTCCACCAGATTGCCTGCTGATGAAGTGGAAGGTTTAAAGGAAATAGGAAAGATTCTGGGAAAAAGAGACTGGAATTTCAGTGCAGATCCTTGCAATGGCGACCATGGATGGATTTCTCAGCCCAACCAAATCCCCAACAATGTTTCTGGTTTTCAAAACAATCTTACCTGTGATTGCGCCTTTCTCAATGCCACGATCTGCCATGTCATCAGCATAGCTCTCAAATCGCAGAGCCTTCAAGGCACTCTCCCGCCCAATCTTGTTCGCTTGCCCTTTCTGCAGCAAATTGATCTCAGTCGGAACTATCTCAGCGGTCGAATTCCATCAGAATGGGGCTCTATGAATCTCGTCAACATTTCCCTGCTTGGAAATCGGTTGACGGGTTCGATTCCAGAGGAGATTGGAAACATCACTACGCTAGAAAATTTGGTCCTGGAAATCAATCAGCTATCAGGAAGCATTCCTCAAGCGCTTGGAAACTTGCCCCAGTTACAGAGATTACATCTTACCTCGAACAACTTCTCTGGGAAGTTGCCAATGTCACTGGGAAAGCTGACCACATTGAAGGAATTTCGAATCGGTGACAATAACTTCTCGGGCCCAATACCGAACTTCATACGTAATTGGACAAATCTTACTGAACTATCCATTCAGGCAAGTGGATTAAGTGGGCCTATTCCTTCGGACATTGGACTATTGACAAAGTTATCTGACTTGAGAATCAGTGACTTGAGTGGAGCTTCATCACCCTTTCCACGTCTTCGTAATTTGGAAGACATCACAATTCTGATATTCAGAAGTTGCAATATCACTGGAAGGCTGCCCAATTTTCTGGATAGGATGCCATCCTTAAAAATCTTAGACCTCAGCTTCAACAAACTAAGTGGACGAATTCCGACCAGATTTAATGCTCTTAAAGGGTTGGATAACATATTTTTAACTGGAAATATGCTGAATGGATCAGTGCCTGATTGGATGCTGAAAGGAAACGGCATCGATCTTTCCTATAATAATTTTACAGTCAAGGTGGCTGGGGAAAGCTGTCGGTCTCAAAAAGTGAACCTCTTTGCCAGCTCAACACAAGACAGTGATTATGGAATTCTTTCATGTTTAGCAGGCTCGTCCTGTTCGAGAACTTGGTACTCTCTTCATATAAACTGTGGTGGGAAGGAACAAACCATAAATGGTACAGTTTTTAAAGGAGACCGAAATACAGGCAGCTCTATGTTCTTTGTAACTGGAACAAATTGGGCAATCAGTAACACTGGCAGTTTTTTGGATGATGGTGAAACTCGAGATGAATACAGTGCAACTAATTCTTCTACTCTTTCTATGACAAATCCTGAACTGTACATGACTGCACGCATTTCTCCATTATCTGTTACTTACTATGGGTTTTGTATGGGAAATGGAAACTACACAGTAAGCCTCCATTTTGCAGAGATAATGTTTACTGATGACAAGACATTCAGTAGTCTTGGCAGACGCTTATTTGACGTTTATATTCAGAAAGAACTGGTCCTAGAGGATTTCAATATAGTGGATGAAGCAGGTGGCGTTGGTAAAGCAGTCGTAAAAAAAATCCCAGTTACCGTGACAAATGGTACGGTGGAGATCCGCTTCTATTGGGCCGGGAAGGGGACAAATGCTATACCTGTGAGGGGAGTTTATGGCCCTCTTATATCAGCTATATCAGTAGATCCTGACTTTGAGGCTCCATCCGAAGGTGGAGAAACTGGAAATTCTGGCATATCTGTAGGTGCAGTGGTAGGAATTGCAGCTGCTTCAGTGTTTGTTATATTATTGGTTCTCGGAATCCTGTGGTGGCGTGTATGTCTACAACGAGAAAAGACACTCGAACAAGAGTTACGAGGTTTGGATTTGCAAACTTGTTCTTTTACATTAAGGCAAATAAAAGCCGCCACAAACAATTTTGATGCTGCCAATAAGCTTGGAGAAGGTGGTTTCGGTTCTGTCTATAAGGGTGTTCTTACGGATGGCACGGCAATTGCAGTAAAACAACTGTCTTCAAAATCAAAGCAAGGAAATCGCGAGTTCGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAATCTTTATGGATGTTGTATTGAAGGAAATCAGCTCTTGTTAGTATATGAATACATGGAAAACAATAGCCTTGCTCATGCCTTGTTTGGTCAAGAAGGAAGTGAACTAGAATTGGATTGGCCAACTAGGCACAAGATCTGTGTTGGTATAGCAAGAGGTTTGGCTTATCTTCATGAAGAGTCCAGACTAAAGATTGTTCACAGAGATATCAAAGCTACTAATGTTCTGTTAGACAAAGAGCTAACCCCCAAGATATCAGACTTCGGCTTGGCCAAGCTCGATGAAGAAGAGAAGTCCCATATAAGTACTCGAATCGCTGGAACTTTTGGATACATGGCACCGGAATATGCCATGCGAGGACACTTGACTGATAAAGCAGATGTTTATAGCTTTGGTGTTGTGTCTTTAGAAATAGTTAGCGGAAGGAGCAACACGACTTTGTGGGCAAATAGCGACGGCTCATATCTTCTAGATTCGGCACTGAAGTTGAAAGAGAAAAACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAACTTCAACAAGGGAGAGGCATTGAGATTGATCAAAATTGCTCTCCATTGCACTAATGTCTCTCCTGCAGCAAGACCTAACATGTCATCAGTAGTGAGCATGCTGGAAGGCAAGCAGGATATTGAGGACATAGTGTTGGATTCTAGTGTCCCTAAAGGATCAATAAACACAGCATGGACTCGTTTATTGGAGGACGCCGAGCAATCAAAGTATGGTTTGTTTGGCGATGTCTCGGCAACAGGTTCTTCAACATCTGCGGTCGATCTCTATCCGATTAACGTATCTCAGTACTTGAATATTAGAGAAACTAGACCATGA 3033 42.5 MFMSGTLFAFFFFFFFFIVGIQSQSTRLPADEVEGLKEIGKILGKRDWNFSADPCNGDHGWISQPNQIPNNVSGFQNNLTCDCAFLNATICHVISIALKSQSLQGTLPPNLVRLPFLQQIDLSRNYLSGRIPSEWGSMNLVNISLLGNRLTGSIPEEIGNITTLENLVLEINQLSGSIPQALGNLPQLQRLHLTSNNFSGKLPMSLGKLTTLKEFRIGDNNFSGPIPNFIRNWTNLTELSIQASGLSGPIPSDIGLLTKLSDLRISDLSGASSPFPRLRNLEDITILIFRSCNITGRLPNFLDRMPSLKILDLSFNKLSGRIPTRFNALKGLDNIFLTGNMLNGSVPDWMLKGNGIDLSYNNFTVKVAGESCRSQKVNLFASSTQDSDYGILSCLAGSSCSRTWYSLHINCGGKEQTINGTVFKGDRNTGSSMFFVTGTNWAISNTGSFLDDGETRDEYSATNSSTLSMTNPELYMTARISPLSVTYYGFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRLFDVYIQKELVLEDFNIVDEAGGVGKAVVKKIPVTVTNGTVEIRFYWAGKGTNAIPVRGVYGPLISAISVDPDFEAPSEGGETGNSGISVGAVVGIAAASVFVILLVLGILWWRVCLQREKTLEQELRGLDLQTCSFTLRQIKAATNNFDAANKLGEGGFGSVYKGVLTDGTAIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVNLYGCCIEGNQLLLVYEYMENNSLAHALFGQEGSELELDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKELTPKISDFGLAKLDEEEKSHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGVVSLEIVSGRSNTTLWANSDGSYLLDSALKLKEKNSLMELVDPRLGSNFNKGEALRLIKIALHCTNVSPAARPNMSSVVSMLEGKQDIEDIVLDSSVPKGSINTAWTRLLEDAEQSKYGLFGDVSATGSSTSAVDLYPINVSQYLNIRETRP 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9127605 9136838 + CmaCh01G012670.1 Cma01g01267 286960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01267 1010 SUPERFAMILY Protein kinase-like (PK-like) 654 942 IPR011009 -
Cma01g01267 1010 Gene3D Phosphorylase Kinase; domain 1 634 744 - -
Cma01g01267 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 81 295 - -
Cma01g01267 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 385 960 - -
Cma01g01267 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 293 348 - -
Cma01g01267 1010 Gene3D Ribonuclease Inhibitor 59 200 IPR032675 -
Cma01g01267 1010 CDD STKc_IRAK 675 942 - -
Cma01g01267 1010 SUPERFAMILY L domain-like 75 350 - -
Cma01g01267 1010 Gene3D Ribonuclease Inhibitor 271 385 IPR032675 -
Cma01g01267 1010 Gene3D Ribonuclease Inhibitor 201 270 IPR032675 -
Cma01g01267 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 385 960 - -
Cma01g01267 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 293 348 - -
Cma01g01267 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 81 295 - -
Cma01g01267 1010 Gene3D Transferase(Phosphotransferase) domain 1 745 955 - -
Cma01g01267 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Cma01g01267 1010 ProSiteProfiles Protein kinase domain profile. 669 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01267 1010 SMART serkin_6 669 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01267 1010 Pfam Malectin domain 406 588 IPR021720 -
Cma01g01267 1010 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Cma01g01267 1010 Pfam Protein tyrosine and serine/threonine kinase 672 940 IPR001245 GO:0004672|GO:0006468
Cma01g01267 1010 Gene3D - 404 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01267 Cma-Chr1:9127605 Cma09g00673 Cma-Chr9:3170204 0 dispersed
Cma04g00629 Cma-Chr4:3229856 Cma01g01267 Cma-Chr1:9127605 1.40E-106 dispersed
Cma01g01265 Cma-Chr1:9117332 Cma01g01267 Cma-Chr1:9127605 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68285 PF07714 PK_Tyr_Ser-Thr 2.40E-50 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01267 - - csv:101220843 1450.65