Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01269 ATGCCTGGGAATAAGTATAAAGTTAACTCAAACGATATTACGGACCATATACCAGGTCGACTAGAAAGGCTCTTGCGAGAGAGAAAGCTAAGGAAAAGCAGTAAGGATTCATATTCAAATGAGGTAAACGACCACAGTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTCGAAAGAAGAAGAAAACGCTGGAATTTCCTATAAATTTTCGGAAGCTTCTACAGCCTCAAGGGCCTTTGCCGAAGGATGTGACAAGCAAGAGTGCAAGCCTCCCAGACAACGGTTGCTGGTTGTGGCCAATAGGCTGCCAGTTTCTGCGGTTAGGAGAGGTGAAGATTCCTGGTCTCTAGAGATTAGTGCTGGAGGTCTAGTGAGTGCACTTCTGGGCGTGAATGACTTTGAAGCGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGGTAGGACAAAAGGCACTGACTGAAGCTTTGGCTGAGAAGAGGTGTATCCCTGTTTTCCTTGATGAAGAAATTGTTCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAAGCAAACCAAATGTTTGCTGACGTAGTAAACAAGCACTATGAGGAGGGTGATGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCCAAATGTCTAAAAGATCATAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCTTCTGAAATCCACAGGACCCTTCCGTCCCGATCAGAGCTTCTGCGTTCAGTACTTGCTGCCGATCTGGTTGGCTTTCACACGTATGATTATGCCCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGATCAGGGAAAGCTAACGCGAGTTGCTGCATTCCCTATTGGTATCGACTCAGATCGATTCATACGTGCACTCAAGACTTCTGAAGTCCAAGTACGCATTGAAGAGTTGAAGGATAGATTTAAAGGTCGAAAGGTAATGTTAGGTGTTGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCTTGGAGGAAAACACTGATTGGCGTGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATATCAAAAGCTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTACCGTGCCCATACATCATCTGGATCGCTCCCTTGATTTTCCTGCATTATGTGCGCTCTATGCTGTAACTGATGTAGCGCTTGTCACATCTTTGAGGGATGGAATGAATCTCGTCAGTTATGAATTCGTCGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCGCAATCTCTGGGTGCTGGGGCACTTTTGGTCAACCCTTGGAATATAACAGAAGTCGCAAAATCCATCGAGCGAGCATTAAAGATGGGTGCTGAAGAAAGAGAAAAGCGCCATTGGCATAATTTTCTTCATGTGACAACACACACTGCCCAGGAATGGGCTGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATTAAACAATGTCCACCCCCGCTTCCATTTGACAATGCAATGAAACGTTATGAGCAATCTACTAATCGATTACTCATACTGGGGTTCAATTCAACATTAACTGAACCAGTGGACACTCCTGAAAGAAGAGGCGATCAGATTAGAGAAATGGATCTGAAACTACACCCAGATTTGAAAGAACCATTAACGGCGATTTGCAACGACCCCAATACGACAGTGGTCATCCTCAGTGGGAGCGATAGAACAGTGTTGGATGATAACTTTGGGGAGTATGATATGTGGTTGGCAGCAGAGAATGGGATGTTTCTACGCTTCACAAGGGGTGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCACGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAACTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGCTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAAGTGCGAGCTGTTGGCGTTACCAAGGGATCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTATGTGTAGGCCATTTTCTTGGGAAGGATGAAGATGTTTACACATTCTTTGAGCCTGAACTACCATCGGATACCATTGGCATGGCAAGATCAAAGGGAACTGACGGACTTAAGTTAACGGGGGAGAGAAGATCTTCCATCAAAGTTCCTGCAAGTAGGAACGGATCGACATCGCCTCACAATAAGGCACGGTCAAACTTGGAGAAGAAAACTTCAAATCATAATTGTGCAAACGGTCGTAAACCATCACCGGAGAAGATTCAATGGAATGTGCTTGATCTCCAGGCTGAGAACTACTTCTCTTGTGCTGTTGGACGATCTCGGACAAATGCTCGATATATGCTCGGATCATCAGATGATGTGGTGGCATTCCTAAAGGAGTTGGCAAGTGCAAAGTCATTTTCTTGA 2787 43.7 MPGNKYKVNSNDITDHIPGRLERLLRERKLRKSSKDSYSNEVNDHSKESELIENDLRSKEEENAGISYKFSEASTASRAFAEGCDKQECKPPRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVNDFEARWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKDHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKTSEVQVRIEELKDRFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENTDWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTTVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKSIERALKMGAEEREKRHWHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIKQCPPPLPFDNAMKRYEQSTNRLLILGFNSTLTEPVDTPERRGDQIREMDLKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARSKGTDGLKLTGERRSSIKVPASRNGSTSPHNKARSNLEKKTSNHNCANGRKPSPEKIQWNVLDLQAENYFSCAVGRSRTNARYMLGSSDDVVAFLKELASAKSFS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9157325 9166189 + CmaCh01G012690.1 Cma01g01269 286962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01269 928 CDD HAD_TPP 593 813 - -
Cma01g01269 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824|GO:0005992
Cma01g01269 928 Gene3D Glycogen Phosphorylase B; 83 335 - -
Cma01g01269 928 MobiDBLite consensus disorder prediction 32 51 - -
Cma01g01269 928 Gene3D Glycogen Phosphorylase B; 337 544 - -
Cma01g01269 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Cma01g01269 928 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825|GO:0005992
Cma01g01269 928 Pfam Trehalose-phosphatase 618 827 IPR003337 GO:0003824|GO:0005992
Cma01g01269 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824|GO:0005992
Cma01g01269 928 MobiDBLite consensus disorder prediction 840 855 - -
Cma01g01269 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 922 IPR001830 GO:0003824|GO:0005992
Cma01g01269 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 922 - -
Cma01g01269 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Cma01g01269 928 Coils Coil 42 62 - -
Cma01g01269 928 MobiDBLite consensus disorder prediction 820 875 - -
Cma01g01269 928 Gene3D - 733 927 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01269 Cma-Chr1:9157325 Cma19g01006 Cma-Chr19:8674708 8.50E-139 dispersed
Cma01g01269 Cma-Chr1:9157325 Cma18g00443 Cma-Chr18:2444622 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01269 K16055 - csv:101204478 1751.1