Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01272 ATGTCTGGAAGAAATCGTGGACCGCCTATCCCACTAAATGGGGTGCATCATGGTGCACTACCATCAGTTCGAGAACCTCCATTTGCCAGAGGCCTTGGGCCAATGCCACATCCGGCACTTCTTGAGGAAATCAGAGAAACACAGTATGGGATGCATCCAGGACCCCTTCCTCCACACCCTGTAATAATTGAGGAGCGTCTTGCTGCCCAACATCAAGATATTCAAGGTCTTCTTCTCGATAACCAGAGGCTAGCTGCGACCCATGTTGCGCTTAAGCAGGAACTTGAAGCAGCCCAGCATGAGTTGCAACGCATGGCTCATGTTGCTGATTCCTTACATGCAGAAAGGGACATTCAGATGAGAGAGTTGTATGAAAAATCGGTTAGACTAGAGGTTGATCTGCGAGGAGTTGAGACTATGCGGGCAGAGCTTCTTCAAGTTCATTCTGATGTAAAGGAACTAACTACTGCAAGGCAGGAGCTCAATGGTCAAGCACAAGCAATGACACAAGATCTAACCAGAATTACTGCAGATTTGCAGCAAGCCCCAGCATTGAGGTCTGAAATTGAAACTGTGAAGCAGGAATTACATCGTGCTAGAGTTGCAATTGAGTATGAAAAGAAGGGATATGCGGAGAATTATGAACATGGTCAGGTTATGGAGAAGAAACTGGTTTCAATGGCTAGGGAGTTGGAGAAACTTAGAGCTGAGGTTGCTAATGCAGAGAAGAGAGCTCATGCTTCTGCTGCTGCAATTGGAAATGCTGCTGCTGGCTATGGTGCAAGTTATGGCAATGCTGATGCTGGATATGCAGGAAATCCATATTCTACAAATTATGGCTTGAACAACGTACAGTCTGGTACAGATGGTTATCCTCCGTATGGACCTGGATCTGTTTCCTGGGGTGCATATGACATGCAACGGGCTCAAGGACATAGATAG 942 46.6 MSGRNRGPPIPLNGVHHGALPSVREPPFARGLGPMPHPALLEEIRETQYGMHPGPLPPHPVIIEERLAAQHQDIQGLLLDNQRLAATHVALKQELEAAQHELQRMAHVADSLHAERDIQMRELYEKSVRLEVDLRGVETMRAELLQVHSDVKELTTARQELNGQAQAMTQDLTRITADLQQAPALRSEIETVKQELHRARVAIEYEKKGYAENYEHGQVMEKKLVSMARELEKLRAEVANAEKRAHASAAAIGNAAAGYGASYGNADAGYAGNPYSTNYGLNNVQSGTDGYPPYGPGSVSWGAYDMQRAQGHR 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9172201 9174993 + CmaCh01G012720.1 Cma01g01272 286965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01272 313 MobiDBLite consensus disorder prediction 1 32 - -
Cma01g01272 313 PANTHER PROTEIN FLX-LIKE 1 1 313 - -
Cma01g01272 313 Coils Coil 151 171 - -
Cma01g01272 313 Coils Coil 217 251 - -
Cma01g01272 313 PANTHER PROTEIN FLX-LIKE 2 1 313 IPR040353 -
Cma01g01272 313 Coils Coil 81 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01272 - - - cmax:111480834 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00701 Cma-Chr1:3670399 Cma01g01272 Cma-Chr1:9172201 6.19E-57 dispersed
Cma01g01272 Cma-Chr1:9172201 Cma13g00042 Cma-Chr13:420679 1.40E-68 dispersed
Cma04g02835 Cma-Chr4:18946567 Cma01g01272 Cma-Chr1:9172201 2.59E-50 transposed
Cma12g00831 Cma-Chr12:6150820 Cma01g01272 Cma-Chr1:9172201 7.54E-39 transposed
Cma01g01272 Cma-Chr1:9172201 Cma09g00681 Cma-Chr9:3206548 3.16E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g23 Blo03g00711 . . . . . . . . . Cma01g01272 . Car01g01088 Car09g00600 Sed11g1611 Cpe06g00530 Cpe02g00651 Bhi09g03572 Tan01g4248 Cmetu07g1260 . Hepe01g1470 . . . . . . . . . . . Cone14ag1015 . Lsi04g01975 Csa04g02253 . Cme07g00491 . . . . . . . . . Cmo01g01327 Cmo09g00661 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007415 1 1 2 1 1 0 2 1 0 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 4 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01272 Cma_Chr01 FPKM 12.131556 11.859338 11.881847 9.68378 14.154274 16.199039 14.180449 11.338559 11.572863 10.96054