Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01275 ATGGATTCCCTCCATGCCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACTAGAACGAAAGCAGCAAGAAGAGGACCAATCTCTCCATTCTTGTTCCCTCCCTGCGAAGAAGCGAAAGGAGTCTCGTGATTCATCGATCTTCATCCCCGACGCTACATTACCCAACGCAATCGCCATTTCCACTTCTCCTTACTGCTTGCCGACGAAGAAAAGAGTCTGGGCGTTTCATCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCTCCTCCGGAAGAAATATCGATTTCAGAAACAAAATCAGAGAGAGAGGAAAAAGAGAAGAAGGAAAGCTCTGATGTTGAGAGTGAGCATCAAGAGATTGAAGCTGTCCAAGAAGAAGAAGATGAGGATGAAGAGGACGGAATCCTCTGTGCGATTTGTCAAAGCACGGATGGAGACCCTTCCGATCCAATCGTGTTCTGTGATGGATGTGATTTGATGGTACATGCTTCGTGCTACGGCAATCCTCTGGTGAAGAATGTACCAGAAGGTGATTGGTTCTGTACCCAATGCTTAGCTTCATCGTCTTCCAAGACGGAGAAGAAAGCTTCTGAAACACCATTTTCGTGCTGTCTTTGTCCTCTCAAAGGAGGGGCAATGAAGCCAACAAACGATGGCCGATGGGCTCATATTGTTTGTGGCCTCTTTGTTCCTGAAGTGTTCTTCGAAGACCCAGATGGCAGAGAAGGGATTGATTGCTCAAAGATTCTCAAAAGGAGATGGAAATCTCAATGCTATATCTGCAAAACCTCTAACGGTTGTGCCATTGATTGCTCAGAGGCTAAATGCAGTTTGGGTTTTCATGTTACTTGTGGTTTGAAGGAGGATCTTTGCATTGAGTACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAAAAGCCACACTGATTTGTGGAAGAAGCAACAACTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAAGTAAGTGA 1020 45.49 MDSLHALPPLKRLRILQELERKQQEEDQSLHSCSLPAKKRKESRDSSIFIPDATLPNAIAISTSPYCLPTKKRVWAFHPDFAPESLDLNVEYKPPPEEISISETKSEREEKEKKESSDVESEHQEIEAVQEEEDEDEEDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCTQCLASSSSKTEKKASETPFSCCLCPLKGGAMKPTNDGRWAHIVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSQCYICKTSNGCAIDCSEAKCSLGFHVTCGLKEDLCIEYQEGRRSGAIVAGFCKSHTDLWKKQQLTGKFKIVARDESK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9187597 9189139 + CmaCh01G012750.1 Cma01g01275 286968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01275 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 106 - -
Cma01g01275 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 103 338 - -
Cma01g01275 339 MobiDBLite consensus disorder prediction 22 45 - -
Cma01g01275 339 Pfam PHD-finger 143 191 IPR019787 -
Cma01g01275 339 MobiDBLite consensus disorder prediction 86 138 - -
Cma01g01275 339 Pfam PHD-zinc-finger like domain 208 305 - -
Cma01g01275 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Cma01g01275 339 PANTHER PHD FINGER PROTEINS 103 338 - -
Cma01g01275 339 PANTHER PHD FINGER PROTEINS 3 106 - -
Cma01g01275 339 Coils Coil 119 139 - -
Cma01g01275 339 SMART PHD_3 142 191 IPR001965 -
Cma01g01275 339 SMART PHD_3 263 318 IPR001965 -
Cma01g01275 339 ProSiteProfiles Zinc finger PHD-type profile. 140 193 IPR019787 -
Cma01g01275 339 CDD PHD_BRPF_JADE_like 142 190 - -
Cma01g01275 339 SUPERFAMILY FYVE/PHD zinc finger 132 197 IPR011011 -
Cma01g01275 339 MobiDBLite consensus disorder prediction 98 124 - -
Cma01g01275 339 ProSiteProfiles Extended PHD (ePHD) domain profile. 206 318 IPR034732 -
Cma01g01275 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 320 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01275 Cma-Chr1:9187597 Cma08g00096 Cma-Chr8:493741 2.21E-29 dispersed
Cma01g01275 Cma-Chr1:9187597 Cma09g00681 Cma-Chr9:3206548 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34327 PF13832 zf-HC5HC2H_2 3.90E-29 CL0390 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01275 K11380 - csv:101203744 532.717