Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01296 ATGGCAATGGCGACCTTCAAGCTTCATCCTCTTCTTCTCGTTTTTCTTGTTCTGTTTCTTCTGCTTATTCCTTCACTGATTGCGGCACAGACAGACTGTCACTGTCCTGAAGAAGAAGAAAACAAAGGAATCCGAAACAAACCGCTAGCCCTAAAATACAAAATCGTCGCCATAGCTACGATTCTCGCCGCTGGATTAATCGGAGTTTCTATTCCGATGCTCGGTAAGGTGATTCCTGCCTTGAGTCCTGAGAAGGAGATTTTCTTTGTTATTAAAGCCTTTGCCGCTGGTGTCATTTTGGCTACCGGATTCATCCATGTTCTTCCTGATGCTTACGAGAGTTTGAAATCGCCGAAACTGAAAGAGGATCCCTGGGCGAAGTTTCCGTTCACTGGCTTGGTGGCTATGGTGGCGGCTATTGGTACTTTAATGGTGGATGCCGGTGCTAGCTCTTATTATACTCGCCTTCATCTGAAGAAAGCTCAGCCTGAGATTGATGAGATGAACGGCAGAGCTATCGACGCTCATATTCCTGTTCATACTCACGGTGGTCATGGCCACGCTCATGACTCCTCTGATGTCACTGGAACACCGGCGGAGATTCTCCGGCACCGCGTGATCTCTCAGGTACTCGAGCTGGGGATAGTGGTACATTCGGTAATTATTGGGATCGGTTTGGGCGTTTCCGAAACTCCCAAAGCCATCAGGCCTCTAGTGGCGGCCATTACTTTTCATCAGTTATTCGAGGGCATGGGCTTGGGAGGATCCATAGCTCAGGCAAAGTTCAAGAACAGAGCAACAATAATAATGGCGCTATTCTTCTGTCTGACAACACCAATTGGGATAGTAATAGGCATTGGAGTAACAAAGGGCTACGACGAAGAGGACCCAAAAGCACTGATAGTGGAAGGGATATTGAACGCAGCTTCAGCAGGTATCTTAATCTATATGGCTCTTGTTGATCTGTTGGCTGCCGATTTTATGAACCCAAGAATGCAGAGTAATGGAAAACTTCAACTTATGGCCAATCTTTCTCTTATTCTTGGAGCTGCCTTGATGTCTTCACTCGCTCGCTGGGCTTGA 1083 47.09 MAMATFKLHPLLLVFLVLFLLLIPSLIAAQTDCHCPEEEENKGIRNKPLALKYKIVAIATILAAGLIGVSIPMLGKVIPALSPEKEIFFVIKAFAAGVILATGFIHVLPDAYESLKSPKLKEDPWAKFPFTGLVAMVAAIGTLMVDAGASSYYTRLHLKKAQPEIDEMNGRAIDAHIPVHTHGGHGHAHDSSDVTGTPAEILRHRVISQVLELGIVVHSVIIGIGLGVSETPKAIRPLVAAITFHQLFEGMGLGGSIAQAKFKNRATIIMALFFCLTTPIGIVIGIGVTKGYDEEDPKALIVEGILNAASAGILIYMALVDLLAADFMNPRMQSNGKLQLMANLSLILGAALMSSLARWA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9284934 9288418 - CmaCh01G012960.1 Cma01g01296 286989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01296 360 TIGRFAM zip: ZIP zinc/iron transport family 39 360 IPR004698 GO:0005385|GO:0016021|GO:0071577
Cma01g01296 360 Pfam ZIP Zinc transporter 52 357 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma01g01296 360 PANTHER ZINC/IRON TRANSPORTER 22 360 - -
Cma01g01296 360 PANTHER ZINC TRANSPORTER 1 22 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01296 Cma-Chr1:9284934 Cma11g01981 Cma-Chr11:12966451 7.60E-123 dispersed
Cma01g01296 Cma-Chr1:9284934 Cma09g00704 Cma-Chr9:3316517 2.00E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01296 K14709 - csv:101215851 510.375