Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01298 ATGGCTTCTGCGTGCGTCAACAACGTTGGAATACAGCCGGAGAATTTCCTCGACGGCTCACGTACCGCCTACACTTCTTATGGTTGGTTGAGCCCTCGCGCATCCTTCAGCCGCGAGTATCCAGACGACTCGTCTGCTAACCTCTCAGGCTTTAAGCTCAGTCCATCTGCCATTGCTGATACTCCTCAGACGAGTAAGCCGGCGATTTCAGGTACAGATCTAGAAGGTACATCCAGTGATTTTGAGTTTAGGCTTGAAGATCCGGTTACTCTGATTCCTGCTGATGAGCTTTTCTTCGACGGAAAGCTTATGCCGCTGCAGATTTCATCGGTGAAATCGTCGGTTAAGAAACTCTCCTCGACGGAGATCGGTTCGCGGTCGCCTGATACAATGACGCCGCGTAGAGTAACGGAAATCGATGGTGCGGATCCGTACTCTTTCTCTCCTCGCGCTCCTAGATGCTCGAGTCGGTGGAGAGAGCTTCTAGGGCTAAAGAAGGCTACTCAGATGACTAACACATCCGCAAAGAACGAAAACCCGAAGACGGAGTTGTCTTCATCGAGCAATAGAATGAAATCTCTGAAGCAATTTCTTCACAGGAATTCGAAACTCGTGTCCTCCGAGTCCACAGATGCCCTATATCATCCGTTACTGAAGGATTTGGATTACGAATCAGTTTTCTTATCCTCTGCTCGCCTCTCTCTTTCTTCTTCATCATCTGGCCATTCGCACGAGGATCTCCCTAGACTCTCACTCGATTTCGATAAGCCATCAAAATTCAATCAAGAACACAAGAATCGGATAAATCTGGTGAAGACGAGAGTATCGCAATCAGAAGCGAAGAGAATAGGGCGGAGCCCGGTCCGTCGGACTCCAGGGGAATCAGGTAGAGTGAAGAGCAGAGAAGTATCCATGGATAGTCCTAGAATGATTTCCTCAGGGAAAATAGTGTTTCAGAGTCTAGAAAGGAGTTCGAGTAGTCCGAGTAGCTTCAATGGCGGACCGAGATTGAAGCACAACGGCATCGAGAGGTCATACTCCGCGAATGTGAGAGTTCCGCCGGTGTTAAACGTCCCGGTGAGCTCGCTGAGAGGTTCATCGAAATCATCGGGGTCGATGTTCGGGTTCAGCCAGCTGTTTTCCTCGCCGCAGAAGAAGACCGAAGTGACTTGCGGCGGCGGTAAAGGCCAGACGAGGCAGCACTGCAGAAACCGGATCACTCGAACCTGA 1230 50.24 MASACVNNVGIQPENFLDGSRTAYTSYGWLSPRASFSREYPDDSSANLSGFKLSPSAIADTPQTSKPAISGTDLEGTSSDFEFRLEDPVTLIPADELFFDGKLMPLQISSVKSSVKKLSSTEIGSRSPDTMTPRRVTEIDGADPYSFSPRAPRCSSRWRELLGLKKATQMTNTSAKNENPKTELSSSSNRMKSLKQFLHRNSKLVSSESTDALYHPLLKDLDYESVFLSSARLSLSSSSSGHSHEDLPRLSLDFDKPSKFNQEHKNRINLVKTRVSQSEAKRIGRSPVRRTPGESGRVKSREVSMDSPRMISSGKIVFQSLERSSSSPSSFNGGPRLKHNGIERSYSANVRVPPVLNVPVSSLRGSSKSSGSMFGFSQLFSSPQKKTEVTCGGGKGQTRQHCRNRITRT 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9300313 9301542 - CmaCh01G012980.1 Cma01g01298 286991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01298 409 MobiDBLite consensus disorder prediction 385 409 - -
Cma01g01298 409 MobiDBLite consensus disorder prediction 168 189 - -
Cma01g01298 409 PANTHER OS06G0675200 PROTEIN 1 391 - -
Cma01g01298 409 MobiDBLite consensus disorder prediction 283 304 - -
Cma01g01298 409 Coils Coil 261 281 - -
Cma01g01298 409 MobiDBLite consensus disorder prediction 122 146 - -
Cma01g01298 409 PANTHER OS06G0675200 PROTEIN 1 391 - -
Cma01g01298 409 MobiDBLite consensus disorder prediction 274 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01298 - - - cmax:111480353 748.429
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01298 Cma04g00633 CCT
Cma01g01298 Cma09g00746 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01298 Cma-Chr1:9300313 Cma17g00253 Cma-Chr17:1302912 1.33E-08 dispersed
Cma04g00633 Cma-Chr4:3249517 Cma01g01298 Cma-Chr1:9300313 6.36E-100 transposed
Cma01g01298 Cma-Chr1:9300313 Cma09g00746 Cma-Chr9:3562027 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g976 . . . . . . . Bma13g00896 Cmo16g00506 Cmo04g00682 Cma01g01298 Cma09g00746 Car01g01106 Car09g00654 . . Cpe02g00632 . . . . . . . Cla11g01590 Cam11g1657 Cec11g1685 Cco11g1682 Clacu11g1814 Cmu11g1628 Cre11g2044 . . . . Lsi04g01869 . . . . Blo10g00684 . Bda12g00778 . Bpe03g00880 . . . Cmo01g01351 Cmo09g00738 Cma04g00633 . Car04g00592 Car16g00422 Cpe14g00394 Cpe01g00570 . . . . . . . Cla07g01012 Cam07g1089 Cec07g1161 Cco07g1139 Clacu07g1063 Cmu07g1054 Cre07g1430 . . Chy07g01048 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002398 2 1 1 2 2 1 4 2 1 1 2 2 3 1 1 4 2 2 4 2 1 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01298 Cma_Chr01 FPKM 4.721951 4.155413 2.455281 4.111292 5.364749 4.503471 4.497348 14.110852 13.386508 12.686091