Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01306 ATGGCTGGTTCCAATTCTTGCAGCTCTTGCTGGCCATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCTCCGTCGAGATCGGGATCCTCTTCACGTTCCCGCTCATACTCCGGCTCTGATTCCCGCTCCAGTTCCCGCTCACGCTCCAGGTCACGGTCTGTATCTGTGTCCCATTCCAGGTCCATTTCCTCGTCTTCGTCTCCCTCCCGCAGTGCTAGTTCTCGGAGCCGAAGTCCCCCTCCTCAGAGAAAGAGTTCTACTGAAACAGCTCGGAGGACTCGCGCTTCACCTCCACCAGCTAAACGAAGTTCTCCACCACCCAGGCAATAACATCTCCATCTACAGTCAAATCCAACTTCATTATTTGAAACCATCACCTGTACGCGAGTCACTTGTTCTTCACATTGATGCACTGAGTAGGAATGTCCATGAGGGTCATTTAAGAGAAATCTTCAGTAATTTTGGTGAAGTAGTCAATGTTGAGCTGGCAATGGATCGCACAGTCAACCTTCCTAAAGGATATGGATATGTTGAATTCAAAACGAGATCTGATGCTGAAAAAGCCCAAGTGTATATGGATGGTGCCCAAATTGATGGGAATGTTATTCGAGCAAGATTTACATTGCCTCAAAGACAGAAAATGGCATCACCTCCAAGGACTGCAGCAGCTGCTTCTAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTGCTGATGCTGAGAAGGACGATATAAAAAGACAGAGAGAACCTTCACCTCGTCGAAAGCCTCCCTCACCTAGAAGACGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCCAGAAGACACCCTGATTCTCCACGCCGCCGTCCGGATTCTCCTCCCCGTCGCCGTGTTGACTCTCCTCCTAGAAGGAGGCCTGCATCACCAATGAGAGGTGGCCGTTCCCCATCACCTTTGGGAAGGCGACATAGATCTCCCCCAAGGCCCTCTCCAAGAAGAATTCGTGGCAGCCCTGTTCGGAGACGTTCACCACCTCCTCCTAGGCGCCGTACACCTCCTCGACGGGCTCGTAGTCCTCCCAGAAGGTCTCCAGTAGTTCGTAGACGGAGCCGTTCACCCATTAGAAGACCAGGTCGATCACGTTCCCGGTCATTTTCACCACGGAGAGGTCGGCCGGGAGCTGCTGGTAGACGTGGGAGATCATCATCTTACTCTGCATCGCCAAGTCCACGGAAGGTAGCCAGGAGAGTATCTCGCAGTCCAAGAAGTAGGCCATTGAGAGGTAGAAGTAGCAGCAGGAGCAGTAGCAGTAGTTCTCCACCTCGCAAGCCATAA 1314 52.66 MAGSNSCSSCWPWRNQAEAVARLRRDRDPLHVPAHTPALIPAPVPAHAPGHGLYLCPIPGPFPRLRLPPAVLVLGAEVPLLRERVLLKQLGGLALHLHQLNEVLHHPGNNISIYSQIQLHYLKPSPVRESLVLHIDALSRNVHEGHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRARFTLPQRQKMASPPRTAAAASKRDGPKPENVGADAEKDDIKRQREPSPRRKPPSPRRRSPVARRGGSPRRHPDSPRRRPDSPPRRRVDSPPRRRPASPMRGGRSPSPLGRRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPGRSRSRSFSPRRGRPGAAGRRGRSSSYSASPSPRKVARRVSRSPRSRPLRGRSSSRSSSSSSPPRKP 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9342762 9349498 + CmaCh01G013060.1 Cma01g01306 286999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01306 437 SUPERFAMILY RNA-binding domain, RBD 124 220 IPR035979 GO:0003676
Cma01g01306 437 SMART rrm1_1 132 205 IPR000504 GO:0003723
Cma01g01306 437 MobiDBLite consensus disorder prediction 318 379 - -
Cma01g01306 437 MobiDBLite consensus disorder prediction 417 437 - -
Cma01g01306 437 CDD RRM_RNPS1 133 205 IPR034201 -
Cma01g01306 437 MobiDBLite consensus disorder prediction 208 437 - -
Cma01g01306 437 PANTHER BNAA09G56240D PROTEIN 125 415 - -
Cma01g01306 437 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 125 415 - -
Cma01g01306 437 Gene3D - 118 219 IPR012677 -
Cma01g01306 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Cma01g01306 437 MobiDBLite consensus disorder prediction 231 256 - -
Cma01g01306 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 135 203 IPR000504 GO:0003723
Cma01g01306 437 MobiDBLite consensus disorder prediction 270 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01306 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 - csv:101216970 234.572
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01306 Cma09g00736 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01306 Cma-Chr1:9342762 Cma01g01162 Cma-Chr1:8472072 1.36E-12 dispersed
Cma01g01306 Cma-Chr1:9342762 Cma09g00736 Cma-Chr9:3500142 2.58E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008093 2 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01306 Cma_Chr01 FPKM 29.1035 32.98336 33.32935 34.992905 50.982807 59.25835 49.540993 51.649067 45.903328 40.53064