Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01327 ATGGCGTCAAGTGTTGATGAAGATGGTAGGGAGCCAGCCATGGAGTCTGGAGAATCTGAGGAAGGAATTGTTGTCCGGGAAGTCTGTGCAAATGGGGTCTCCATAAAAACAACAGAAGTAGAAGCAAAACTCGATGAAGGAAATATTCAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCCCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATCTAGAAGGTGCACTACGTGTGTTCGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGTATTGCTGAGAAGACACCTCCAAAAAAAGGACGTTCGCGCTCTGATTCTCAGCCTGCAGTTTCACAGCATGCTGCAAGCCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGACGCCATAGAGAAGATATTCCAACAAGGAATTCCTGACGGGCAAGTGGATGATAGATTGCAAGAGACTGTCAATCAGGCTGTTGAACTCCTCCCTGAACTGTGGAAGCAGGCTGGCTGTTTCCAGGAAGCAATATCTGCCTATAGGCGTGCTCTCTTAAACCAATGGAACCTCAGTAATGACAGCTATGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTCGACGCTGGTCCTCCTAGTCTAGCTGTTCAACTTGAAGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGCTTCTTGTGAAGGAATGTTTCCTTGGTAATACAAAATGGGATCCATCCGTGATGGAGCACCTAATATTTGCTCTATCCTCATGCAGACAGACTTCTGTTTTAGCAAAACAATTTGAAGAGGTCATGCCTGGGGTATATCGCCGTGTAGATCGTTGGAAGTATTTAGCTCTTTGTTATTGTGCAGCTGGACAGAACAAAGTTGCCTTGAATCTTCTGAGAAAGACTCTACACAAACACGAGCAACCAGGCGATGTAGCAGCCTTATTACTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTAGCTGCTGAAGGTGTTGAATACGCCCAGCGGGCAATTAATAATTGTATAGGAGATGAAGAGCATTTAAAGGGTGTGGGTCTACGCATGTTAGGTCTTTGCTTGGGAAAACAAGCCAAAATTTCTTCCTCTGACTTCGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCTGCAAATGGTCTGGAGAGAAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAGTATTCCGAATATCGGAATTTGAATGCTGCATTGCAATATGCAAAGAAGTTCATTGATGAAACCGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTCGCTCTTGTTTTGTCTGCCCAAAAGAGATTTCCAGAGGCGGAAGTGGTCACTGACGCTGCGATGGATGAGACCACAAAATGGGAACGAGGACCACTTCTTAGACTCAAGGCAAAGCTGAAAATCTCTCAATCATTACATATGGATGCTATTGAAACATACCGTTATCTCCTTGCATTAGTTCAAGCACAAAAAAAATCCTTTGGACCGCTCAGAATCGTCCCTCAGGTTGAAGATGATAAATTGAATGAATTTGAAGTTTGGAATGGTCTAGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCAAAAGAGCTGAAAGAGTTCTCCCCAGAATTACTACACACTGAAGGTCTAATGTACCAAGGATGTGAGAAAATACAGGAAGCCCTAGCTGCATACATTAACGCTCTTCTACTTGAACCAACTTACGTTCCTTGCAAGGTTTTGATTGGTGCTATTTGGTCGAAAGCAGGCCCGGATGCGTTGCCTATAGCAAGAGGCTTACTTTCAGACGCATTGAGATTAGATCCGACCAACGGTAAGGCTTGGTTGCAGCCGCCATGCTTGAAGAATCAGATCCCGTTGAAAGCTTCAGCAGTATTCTATAGTCGGTCATTAATTTATTTCAAGTACAGGATGATCGACTTCAAACTAGCTCCGAAATGGATTGAAGATCGCATACATTTCACTTTCTTAGAGACCGAAACTAAGGAGTTGGGGCGAAATGTGAAGAACTATGCTGTAAGTCAGACTAAAGACAGTTTAAAGGCAGTTGGATATGTTTTATCACATCAAGGAGAAAAGTCTTAG 2268 43.3 MASSVDEDGREPAMESGESEEGIVVREVCANGVSIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNLEGALRVFDGIDLQAAIQRLQPCIAEKTPPKKGRSRSDSQPAVSQHAASLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAIEKIFQQGIPDGQVDDRLQETVNQAVELLPELWKQAGCFQEAISAYRRALLNQWNLSNDSYARIQKGFAVFLLYSGVDAGPPSLAVQLEGSYVPKNNLEEAILLLMLLVKECFLGNTKWDPSVMEHLIFALSSCRQTSVLAKQFEEVMPGVYRRVDRWKYLALCYCAAGQNKVALNLLRKTLHKHEQPGDVAALLLAAKICSEDPYLAAEGVEYAQRAINNCIGDEEHLKGVGLRMLGLCLGKQAKISSSDFERSRLQSEALKSLEAANGLERNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFPEAEVVTDAAMDETTKWERGPLLRLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKLNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPELLHTEGLMYQGCEKIQEALAAYINALLLEPTYVPCKVLIGAIWSKAGPDALPIARGLLSDALRLDPTNGKAWLQPPCLKNQIPLKASAVFYSRSLIYFKYRMIDFKLAPKWIEDRIHFTFLETETKELGRNVKNYAVSQTKDSLKAVGYVLSHQGEKS 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9469586 9478243 - CmaCh01G013270.1 Cma01g01327 287020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01327 755 SUPERFAMILY TPR-like 44 265 IPR011990 GO:0005515
Cma01g01327 755 Gene3D Tetratricopeptide repeat domain 238 671 IPR011990 GO:0005515
Cma01g01327 755 Gene3D Tetratricopeptide repeat domain 39 237 IPR011990 GO:0005515
Cma01g01327 755 ProSiteProfiles TPR repeat profile. 596 629 IPR019734 GO:0005515
Cma01g01327 755 SUPERFAMILY TPR-like 512 671 IPR011990 GO:0005515
Cma01g01327 755 MobiDBLite consensus disorder prediction 1 21 - -
Cma01g01327 755 PANTHER PROTEIN NPG1 14 671 IPR043376 -
Cma01g01327 755 SUPERFAMILY TPR-like 318 492 IPR011990 GO:0005515
Cma01g01327 755 PANTHER CALMODULIN-BINDING PROTEIN 14 671 - -
Cma01g01327 755 SMART tpr_5 472 505 IPR019734 GO:0005515
Cma01g01327 755 SMART tpr_5 596 629 IPR019734 GO:0005515
Cma01g01327 755 SMART tpr_5 316 349 IPR019734 GO:0005515
Cma01g01327 755 SMART tpr_5 562 595 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01327 Cma-Chr1:9469586 Cma19g00105 Cma-Chr19:634173 0 dispersed
Cma01g01327 Cma-Chr1:9469586 Cma09g00720 Cma-Chr9:3420603 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01327 K21843 - csv:101206641 1201.81