Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01343 ATGGCCTTCTATACGGTAAAATGGCAATGGCTACTGATTCTTCACATTGTGCCGCTTTTCATGATAATGAGCAGAAGCAGTGGTACCAGTTCTGATGGTGAGGCACTTTTGAGCTTCAGAGCAGCAATTCTTGATTCTGATGGCGTTCTTCTTCAATGGAAGCCAGAAGAATCCCATCCTTGTAAATGGAGAGGAGTAACGTGTGATCCAAAAACTAAGAGAGTGATATATCTGAGTCTTCCTCATCACAAACTTAGTGGATCTTTATCCCCTGAACTTGGAAAACTTGACCACTTAAAAATTTTAGCACTTCATGACAATAACTTTTATGGGACAATTCCATCAGAATTAGGCAATTGCTCACAGTTGCAGGGAGTGTTTCTGCAGGGTAATTACTTTAGTGGGTTCATTCCCAATGAATTGGGCAATCTTTCGGCACTTAAAAATTTAGATATTTCAAGTAACTCGCTCGGTGGAAATATTCCCATCTCGCTTGGGAACTTGAGCAAGCTTACTACCCTAAATATGTCTGCCAATTTTCTGGTTGGATCAATACCGAATGTTGGAGTGCTAATCAACTTCTCGGAAAGCTCATTTCTTGGAAACCGTGGCTTGTGCGGGAAGCAAATAAATGTTATGTGCAAAGATGACAAAGAGACACCTGGAACAAATGATTCACCATTCTCAGTGCAAAATCAATTTGTAAGGAAGAAGTACTCTGGCCGACTACTTATAAGTGCTTCGGCAACTGTGGGTGCTTTACTGCTGGTTGCCCTAATGTGTTTCTGGGGTTGTTTTCTGTATAAAAAGTTCGGAAAAAATGACAGTAAAGGTCTAGTGCTGGACGTTTGTGGAGGTGCTTCGGGTGTAATGTTTCACGGAGACTTGCCATACTCATCTAAAGATATTATTAAGAAATTTGAGACACTGAATGAAGAACACATAATAGGATGTGGGGGCTTTGGAACCGTATACAAGCTTGCAATGGATGATGGCAATGTTTTTGCCTTGAAAAGAATCATGAAATTGAATGAAGGCTTTGATCGTTTCTTTGAGAGAGAGCTCGAAATACTTGGAAGCATGAAGCACAGGTTCCTTGTGAATTTGCGAGGATATTGCAATTCTCCTACATCAAAGCTGTTAATTTATGATTTCCTTCCTGGAGGCAGCCTTGATGAGGCACTACACGGTGTCCGTACTGAAGTATCTGAGCAACTAGACTGGGATGCACGCTTAAATATTATCATGGGAGCTGCAAAGGGACTTGCATATTTGCATCATGATTGCTCACCACGGATCATTCACCGAGACATAAAATCAAGCAACATTTTACTTGATGCTAATTTGGAGGCTAGAGTTTCTGATTTTGGACTTGCGAAGCTTTTAGCGGATGAAGAATCACATATTACAACTATTGTTGCAGGAACATTTGGTTATCTGGCTCCTGAGTACATGCAAAGTGGTAGAGCTACTGAAAAGACTGATGTGTACAGTTTTGGGGTATTGGTACTTGAAGTATTGAGTGGCAAACGTCCCACCGATGCATCATTCATTGAAAAGGGGCTAAACATCGTTGGTTGGTTAAACTTTCTAGTTACAGAGAGCCGACAACGAGAAATCATTGATGTACAGTGCGAGGGAATGCGAACAGAAAGCCTCGACGCATTAGTTGCGGTCGCGATCCAATGCGTTTCGTCGAGTCCAGAAGAACGCCCCACCATGCACAGGGTGGTCCAGATATTGGAGTCTGAGGTTATGACTCCATGCCCAAGTGATTTCTATGATACAGATTAA 1794 41.86 MAFYTVKWQWLLILHIVPLFMIMSRSSGTSSDGEALLSFRAAILDSDGVLLQWKPEESHPCKWRGVTCDPKTKRVIYLSLPHHKLSGSLSPELGKLDHLKILALHDNNFYGTIPSELGNCSQLQGVFLQGNYFSGFIPNELGNLSALKNLDISSNSLGGNIPISLGNLSKLTTLNMSANFLVGSIPNVGVLINFSESSFLGNRGLCGKQINVMCKDDKETPGTNDSPFSVQNQFVRKKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDSKGLVLDVCGGASGVMFHGDLPYSSKDIIKKFETLNEEHIIGCGGFGTVYKLAMDDGNVFALKRIMKLNEGFDRFFERELEILGSMKHRFLVNLRGYCNSPTSKLLIYDFLPGGSLDEALHGVRTEVSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDANLEARVSDFGLAKLLADEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTESRQREIIDVQCEGMRTESLDALVAVAIQCVSSSPEERPTMHRVVQILESEVMTPCPSDFYDTD 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9597494 9605696 + CmaCh01G013430.1 Cma01g01343 287036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01343 597 PANTHER RECEPTOR-LIKE PROTEIN 55 4 595 - -
Cma01g01343 597 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524
Cma01g01343 597 SMART serkin_6 310 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01343 597 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cma01g01343 597 Gene3D Phosphorylase Kinase; domain 1 287 385 - -
Cma01g01343 597 ProSiteProfiles Protein kinase domain profile. 310 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01343 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cma01g01343 597 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 4 595 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cma01g01343 597 Pfam Protein kinase domain 312 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01343 597 SUPERFAMILY Protein kinase-like (PK-like) 296 581 IPR011009 -
Cma01g01343 597 SUPERFAMILY L domain-like 29 189 - -
Cma01g01343 597 Gene3D Transferase(Phosphotransferase) domain 1 386 589 - -
Cma01g01343 597 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01343 Cma-Chr1:9597494 Cma11g00165 Cma-Chr11:851940 0 dispersed
Cma04g00586 Cma-Chr4:2970838 Cma01g01343 Cma-Chr1:9597494 0 transposed
Cma16g00239 Cma-Chr16:1094147 Cma01g01343 Cma-Chr1:9597494 2.33E-24 transposed
Cma01g01343 Cma-Chr1:9597494 Cma09g00750 Cma-Chr9:3591082 0 wgd
Cma01g01343 Cma-Chr1:9597494 Cma09g00683 Cma-Chr9:3227437 2.51E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68287 PF00069 Pkinase 7.50E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01343 - - csv:101211605 1122.84