Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01365 ATGGCTGCCCTTTTCCATTGCCTTTCAAAATTCCTTAGCTCAAAAACAGAAAAACACAAACAAATGGGAAGAGGGAAGATCGAGATCAAGCGGATTGAAAACTCAACCAACCGACAAGTCGCTTATTCAAAGAGACGAAATGGGATAATCAAGAAGGCTAAAGAAATCACTGTTCTTTGTGATGCTAATGTTTCTCTTGTTGTTTTTGCTAGCTCTGGCAAAATGCATGAGTATTGCAGCCCTTCAATGCAGTTGGTTGATATCTTGGATAAGTATCATAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAATGAAATGGACAGAGTGAAGAAAGAGAACGACAACATGCAGATTGAGCTGAGGCATCTGAGAGGCGAAGATATAACGTCTCTCAATTACAAGGAGCTAATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGACAAGCAGTCGGAGTTCATGAAAATGATGAGGACAAATGAAAGGATGATGGAAGAGGAGAATAAGCGGCTGAACAATGAGCTGTACCAAAAGGAGATGGAAGCCATGGGAGAATGTGTGAGAGAAATGGATAATGGATACAATCAGAGAATGAGAGATTTCAATTCTCAGATGCCTTTCGCCTTCAGAGTGCAGCCCATTCAGCCAAATCTACAAGAAAGGATATAA 699 41.77 MAALFHCLSKFLSSKTEKHKQMGRGKIEIKRIENSTNRQVAYSKRRNGIIKKAKEITVLCDANVSLVVFASSGKMHEYCSPSMQLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVRDKQSEFMKMMRTNERMMEEENKRLNNELYQKEMEAMGECVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9719667 9724142 - CmaCh01G013650.1 Cma01g01365 287058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01365 232 SUPERFAMILY SRF-like 23 117 IPR036879 GO:0003677|GO:0046983
Cma01g01365 232 Gene3D - 34 121 IPR036879 GO:0003677|GO:0046983
Cma01g01365 232 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Cma01g01365 232 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Cma01g01365 232 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Cma01g01365 232 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Cma01g01365 232 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Cma01g01365 232 Coils Coil 98 132 - -
Cma01g01365 232 Pfam K-box region 103 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g01365 232 ProSiteProfiles K-box domain profile. 105 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma01g01365 232 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 22 231 - -
Cma01g01365 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Cma01g01365 232 Coils Coil 164 191 - -
Cma01g01365 232 CDD MADS_MEF2_like 23 101 IPR033896 GO:0000977|GO:0045944
Cma01g01365 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 231 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01365 Cma09g00768 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01365 Cma-Chr1:9719667 Cma01g01941 Cma-Chr1:12594843 4.72E-42 dispersed
Cma01g01365 Cma-Chr1:9719667 Cma09g00768 Cma-Chr9:3703771 3.58E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34333 PF01486 K-box 1.60E-18 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01365 K09264 - csv:101222239 369.007