Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01369 ATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGAGTCCTGACCAACACTCTCGAGACTTCCAGTTGCCCTCACATGCTCTTTTATGGACCGCCGGGTACCGGAAAAACCACCACCGCCCTCGCGATTGCTCATGAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAATTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATAAAAGATTTTGCTGGTGTTGCTGTAAGCAGTGGCCAACGCCAGGGGGGTTATCCTTGCCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAATGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCAAGGTGTGCAAAGTTCAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGCAATGAAGAAGGTCTAAGTCTAGATGGAGAGGCTCTTTCAACCTTAGGTTCAATCTCTCAAGGTGACCTGCGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGGTCATCAATATCTTCCAAGGATCTGATTAGCGTGTCTGGGATTATCCCACGGGAGGTTGTTGATGAGCTTTTTGCTGCTTGTAAAAGTGGTAACTTCGATCTTGCAAATAAGGAAGTCAATAATGTAATTGCAGAAGGATATCCTGTGGCTCAGATGCTTTCACAGATATTTGAGGTGGTTATTGAAGCCCATGATTTGCAAGATGAACAAAAGGCCAAGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTTGATGGTGCGGATGAATATTTGCAGCTGTTGGATGTGGTTAGTCAAACAATGCAAGCTTTGAGTAGCAGTATGCAACTGTAA 1014 44.67 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETSSCPHMLFYGPPGTGKTTTALAIAHELFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSNVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLGSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIIPREVVDELFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVIEAHDLQDEQKAKICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSSMQL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9736991 9741622 - CmaCh01G013690.1 Cma01g01369 287062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01369 337 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677|GO:0006260
Cma01g01369 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Cma01g01369 337 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Cma01g01369 337 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Cma01g01369 337 CDD HLD_clamp_RFC 174 233 - -
Cma01g01369 337 Pfam Replication factor C C-terminal domain 241 326 IPR013748 -
Cma01g01369 337 Gene3D - 175 239 - -
Cma01g01369 337 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Cma01g01369 337 Gene3D - 3 173 IPR027417 -
Cma01g01369 337 Gene3D - 240 330 - -
Cma01g01369 337 SMART AAA_5 41 174 IPR003593 -
Cma01g01369 337 CDD AAA 26 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01369 Cma-Chr1:9736991 Cma16g01020 Cma-Chr16:7853491 3.70E-66 dispersed
Cma04g00606 Cma-Chr4:3084392 Cma01g01369 Cma-Chr1:9736991 1.21E-11 dispersed
Cma01g01369 Cma-Chr1:9736991 Cma15g00666 Cma-Chr15:3169342 6.82E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01369 K10755 - csv:101221224 619.772