Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01377 ATGCCAGCATCTCCTTCCTTCCCATCTGGATCTCGCGGAAAATGGAAGAAGAAGAAGAGGGACACGCAAATTGGCCGTAGAAACAGCTATGGGAATAGTAATAACAACGGAAGCAACAAGCACGATGATGATGATGAAGATGAAGATCTTGCCACTGTTGAAAATGAGGAAATGGAACGCGATAACGACGATTCTGAGGACCCTCAGCCGACGCCCAATTCGAGTCTTCAGGAGACTGAGCTCTTGTCGGATGATAAAATGCGAGTCTCTGAGTTTCCTCAGGTGGTCAAGCGGGCTGTCACTCGGCCTCACTCTTCTGTGTTGGCTGTTGTGGCAATGGAGAGGGCAAATCAAAGTAAGGTGCTGTCTGGGAATCCCTTGATTTTGGAGAATGTGTCTTACGGGCAGCTGCAGGCGCTGTCTGCTATGCCTGCGGATAGTCCGGCTTTGCTGGATCAAGAGAGGGTGGAGGCTGGGAATGCGGCGTATGTGATAACTCCACCATCGATTATGGAAGGTCGTGGCGTGGTCAAGAGGTTCGGGAGTAGAGTTCATGTTGTTCCTATGCACTCAGATTGGTTTTCACCTGCTACAGTGCATCGACTCGAGAGACAAGTTGTTCCACATTTTTTCTCTGGGAAATTGCCTGACCGCACTCCTGAGAAGTATATGGAAATCCGAAACTTTGTTGTTGCCAAATACATGGAGAATCCTGAGAAAAGCGTCACAGTTTCAGACTGCCAAGGATTAGTTAATGGTGTCAGTAATGACGATTTAACTCGAATTGTTCGATTTCTTGATCATTGGGGTATTATTAATTATTGTGCCCCGACACCTAGTTGTGAACCATGGAATAGAAGTTCATACTTGAGAGAAGATATGAACGGTGAGATTCATGTGCCATCAGCTGCTTTGAAGCCTATTGATAGCTTAATCAAATTTGACAAACCAAAATGTAGGCTCAAGGCAGCCGATATCTATTCGGAACGTTCATGCCATGATGACAATGATGATTTATGTGATTTGGATAACAGAATTCGGGAGCGTCTAGCTGAAAGTCATTGTAGCTCGTGTTCTCGAACAGTTCCCATTGTATGCTACCAATCACAGAAGGAGGTAGATGTTTTACTTTGCACCGACTGCTTCCATGAAGGAAAATATGTTGCTGGTCATTCGAGCATCGATTTTCTGAGGGTGGACATGACGAAAGATTATGGCGAACTAGATAGCGAAAATTGGACCGATCAAGAAACTCTGTTGCTTTTAGAGGCGATAGAATTGTATAATGAGAATTGGAATGAAATAACAGAACATGTTGGGTCCAAGTCTAAAGCTCAATGCATTATACATTTTCTCCGTCTATCAGTTGAAGATGGTATTCTAGAAAATGTTGATGTGCCTGGTGTTCCTCTCTCATCCAATTCTTCACATGGAAAAGATAACGAGAAGTCACATTCAAATATTAATGGAAATGTAGCCGGATCTTCCTCTCAAGACAATAAAGAGATGCATGATAGACTACCATTTGCTAATTCTGGGAACCCAGTCATGGCGTTGGTTGCTTTTCTTGCATCTGCTATTGGACCAAGAGTTGCTGCATCTTGTGCCCATGCATCCTTAGCTGCATTATCTGAGGACAGTGAAGCTTCTTCTGGGAGCATATTTCAAGTGGAAGGTTCTGTGAATCCTAGTAGGACGAATGTGGAGGTCACACATGTCAGAGACGGTGGCTCCTATGGAAAGCTTCCAAATTCAGTCAAGCTAAAAGATGAGAATAAGGCAGAGACAGAGGTAACACTATTATCTGCTGAAAGAGTTAAAGTTGCATCAAAAGTAGGTCTTGCTGCCGCTGCAACAAAGGCTAAATTGTTCGCAGACCACGAAGAACGAGAAATCCAACGGTTGTCTGCTAATATTATAAATCATCAGTTAAAAAGACTTGAGTTGAAGCTGAAGCAGTTTGCAGAAGTAGAAACCTTCTTGATGAAGGAATGCGAACAAGTCGAGAGGACAGGGCAGAGATTTGTTGCAGAACGAGCTCGAATGTTAGGTGTCCAATTTGGAGCTGCTGGAGTCAGCTCACCTGCGAGTTTACCGGGGGTTATTCCTCCCGTGGTAAACAACAATAGGGTGAGCTCACCTGCGAGTAGGCCGAATGTGATCTCGCCTCCACCATCCCAGCCAAGCGTTTCGGGGTATGGCAACAACCAACCACTTCATCCCCACATGTCGTACGTGCCCAGGCAGTCGATGTTTGGCTTGGGGCAAAGGCTGCCTTTGTCAGCAATTCAGCAGCAGCAGCAGCTGGCCTCAACGACTTCGTCTAATGCTATGTTCAATGGCCCGAGCAATGCACAGGCTTCTCTCAGTCACCCAATGATGAGGCCAGTTACTGGATCCAGCTCTGGATTAGGCTGA 2418 45.49 MPASPSFPSGSRGKWKKKKRDTQIGRRNSYGNSNNNGSNKHDDDDEDEDLATVENEEMERDNDDSEDPQPTPNSSLQETELLSDDKMRVSEFPQVVKRAVTRPHSSVLAVVAMERANQSKVLSGNPLILENVSYGQLQALSAMPADSPALLDQERVEAGNAAYVITPPSIMEGRGVVKRFGSRVHVVPMHSDWFSPATVHRLERQVVPHFFSGKLPDRTPEKYMEIRNFVVAKYMENPEKSVTVSDCQGLVNGVSNDDLTRIVRFLDHWGIINYCAPTPSCEPWNRSSYLREDMNGEIHVPSAALKPIDSLIKFDKPKCRLKAADIYSERSCHDDNDDLCDLDNRIRERLAESHCSSCSRTVPIVCYQSQKEVDVLLCTDCFHEGKYVAGHSSIDFLRVDMTKDYGELDSENWTDQETLLLLEAIELYNENWNEITEHVGSKSKAQCIIHFLRLSVEDGILENVDVPGVPLSSNSSHGKDNEKSHSNINGNVAGSSSQDNKEMHDRLPFANSGNPVMALVAFLASAIGPRVAASCAHASLAALSEDSEASSGSIFQVEGSVNPSRTNVEVTHVRDGGSYGKLPNSVKLKDENKAETEVTLLSAERVKVASKVGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVERTGQRFVAERARMLGVQFGAAGVSSPASLPGVIPPVVNNNRVSSPASRPNVISPPPSQPSVSGYGNNQPLHPHMSYVPRQSMFGLGQRLPLSAIQQQQQLASTTSSNAMFNGPSNAQASLSHPMMRPVTGSSSGLG 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9767066 9773971 - CmaCh01G013770.1 Cma01g01377 287070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01377 805 MobiDBLite consensus disorder prediction 42 64 - -
Cma01g01377 805 ProSiteProfiles SANT domain profile. 408 459 IPR017884 -
Cma01g01377 805 CDD SANT 412 454 IPR001005 -
Cma01g01377 805 Coils Coil 625 645 - -
Cma01g01377 805 Pfam SWIRM domain 188 274 IPR007526 GO:0005515
Cma01g01377 805 Pfam SWIRM-associated region 1 612 682 IPR032451 -
Cma01g01377 805 ProSiteProfiles SWIRM domain profile. 185 283 IPR007526 GO:0005515
Cma01g01377 805 PANTHER SWI/SNF COMPLEX-RELATED 69 804 - -
Cma01g01377 805 MobiDBLite consensus disorder prediction 1 87 - -
Cma01g01377 805 Pfam Myb-like DNA-binding domain 411 453 IPR001005 -
Cma01g01377 805 MobiDBLite consensus disorder prediction 709 743 - -
Cma01g01377 805 MobiDBLite consensus disorder prediction 471 508 - -
Cma01g01377 805 SMART sant 409 457 IPR001005 -
Cma01g01377 805 MobiDBLite consensus disorder prediction 765 805 - -
Cma01g01377 805 ProSiteProfiles Myb-like domain profile. 405 455 IPR001005 -
Cma01g01377 805 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 69 804 - -
Cma01g01377 805 SUPERFAMILY Homeodomain-like 410 460 IPR009057 -
Cma01g01377 805 SUPERFAMILY Homeodomain-like 184 282 IPR009057 -
Cma01g01377 805 Gene3D - 409 459 - -
Cma01g01377 805 Gene3D - 191 278 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01377 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 1318.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01377 Cma09g00777 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01377 Cma-Chr1:9767066 Cma19g00658 Cma-Chr19:6934953 1.70E-11 dispersed
Cma18g00884 Cma-Chr18:7640554 Cma01g01377 Cma-Chr1:9767066 1.50E-06 dispersed
Cma01g01377 Cma-Chr1:9767066 Cma09g00777 Cma-Chr9:3750999 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01377 Cma_Chr01 FPKM 11.225558 11.248919 12.058209 13.462949 17.804024 17.30867 17.796564 18.813101 17.572496 17.473587