Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01383 ATGTCGGATACGGAGACGGAGACGAAGGCGGAGGCGGAGGTGTATGACGCGTCGATGCAGGTGAAGGAGTTGAGAGAAAGTTTTGCCTCCGGAAAGACTCGGAGCTATAAGTGGAGAGTTTCGCAGCTTGAGTCTCTCTTGAAGTTTAGCGTTGTCCACGAGGAAGATATCTGCGATGCGCTTCGCTCTGACCTATCCAAGCCTGTGATGGAAGCCATTATTCATGAGATAGCTTTGTTGAAAAATTCATGTAAATTGGCAATTAAAGAACTCAGGCATTGGATGACGCCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCTGCTGCAATTGTACCAGAACCTCTGGGTGTTGTCCTGATCATTTCTGCTTGGAATTATCCATTCTTATTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAGCAACATCATCTTTAATGGCAAAACTTTTAGGGAAATATTTGGATCCTTCTGCTGTAAAAGTTATTGAGGGTGCTACTTCCGAAACTTCTGCTTTGCTGGAGCAAAAATGGGACAAAATATTTTACACAGGCAGTGGAAGAGTGGGGCGTATAGTTATGGCAGCTGCTGCCAAGCACCTCACACCAGTTGTTTTGGAGCTTGGAGGAAAATCTCCAGTAGTAGTTGATTCACAAATCAATTTACAAGTCGCGTGTAGGCGGATTATTTCTGGTAAGTGGGGTTGCAACAATGGGCAAGCATGCATTGCTCCTGATTATATCATAACTACGAAAGAATTTGCTCCAAAATTGGTGGAGACTCTGAAACAAGAACTGGAGAGATTTTATGGAAAAAACCCTATGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAATCACTTTGCTCGCTTGTCAAAGCTCTTAGATGATGATAAGGTTTCTGGCAAGATTGTGCATGGAGGTGAAAGGGACAAAACCAAATTACAGATTACTCCGACCCTCTTATTGGATGTCCCTCGAGACTCTCTGATTATGACGGAGGAGATCTTTGGTCCCTTGCTTCCTATTCTCACGGTCGACAAAGTGGAGGATAGCTTCGAAGTAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACCAACAACAAGAGGCTCAAGGACCAGTTCGTAGCTTGCATCTCTGCAGGGGGTGTGGCCATCAATGACACCACCTTACATCTGACAGTTAGCACACTACCATTTGGAGGAGTTGGGGACAGTGGAATGGGATCTTACCATGGGAAGTTCTCATTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGAAGCTTCGCAGGCGATGCGCCGATGAGATACCCGCCGTACACGAAGGGAAAGCTAAGAATTCTCAAGGCTCTTCTTGGAGGTGACATATGGGGTCTCATTCGTGCTCTTCTTGGGTGGTCATAG 1470 44.69 MSDTETETKAEAEVYDASMQVKELRESFASGKTRSYKWRVSQLESLLKFSVVHEEDICDALRSDLSKPVMEAIIHEIALLKNSCKLAIKELRHWMTPEKVKTSITTFPSSAAIVPEPLGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPATSSLMAKLLGKYLDPSAVKVIEGATSETSALLEQKWDKIFYTGSGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSQINLQVACRRIISGKWGCNNGQACIAPDYIITTKEFAPKLVETLKQELERFYGKNPMETKDLSRIVNANHFARLSKLLDDDKVSGKIVHGGERDKTKLQITPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFEVVNSGTKPLAAYLFTNNKRLKDQFVACISAGGVAINDTTLHLTVSTLPFGGVGDSGMGSYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGDIWGLIRALLGWS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9802339 9807380 - CmaCh01G013830.1 Cma01g01383 287076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01383 489 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 222 229 IPR029510 GO:0016491
Cma01g01383 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 226 426 IPR016163 GO:0016620
Cma01g01383 489 PIRSF ALDH 3 483 IPR012394 GO:0006081
Cma01g01383 489 PANTHER ALDEHYDE DEHYDROGENASE 14 489 - -
Cma01g01383 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 444 IPR016162 GO:0016491
Cma01g01383 489 Pfam Aldehyde dehydrogenase family 10 446 IPR015590 GO:0016491
Cma01g01383 489 PANTHER ALDEHYDE DEHYDROGENASE 14 489 IPR012394 GO:0006081
Cma01g01383 489 SUPERFAMILY ALDH-like 17 462 IPR016161 GO:0016491
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01383 Cma09g00785 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01383 Cma-Chr1:9802339 Cma09g00785 Cma-Chr9:3798961 0 dispersed
Cma01g01383 Cma-Chr1:9802339 Cma01g01384 Cma-Chr1:9807516 2.97E-14 tandem
Cma02g01246 Cma-Chr2:7317053 Cma01g01383 Cma-Chr1:9802339 1.89E-165 transposed
Cma01g01383 Cma-Chr1:9802339 Cma09g00784 Cma-Chr9:3790911 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01383 K00128 - csv:101219329 803.512