Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01385 ATGACAAAAATAAATCGGTTACCAGTGGCGGGTTCCACGAGCCTGAGGTTGCTCTGTTTTTGCTCTGCTTCTTCTTCTTTCTTCTCCTTCTTCTTCATTCAATTCAATTTCTCTGAAACACAGACAAGCAAACAGGCGAGTAGACCGAGAAAGAAGAAGAGACCCAATGGACAAATTTTGCTCGGATCTCCACCTTCACGCATTCCCATGTCTGCCTTATATATATATAATATTATTTCTGGATCTGGAGTGGTTGTTGATGTTGTTCATGATGCTTCTTCGCCGTCGATTTGGAATCGGATGGATACGGCGGCGGCCATGATTAGGAGGGGAGGTTATGCCGGTGTTGGTTTTGCTGTGGTTTTTGTTACCATGGGGTGTGGAGGATCCAAGGTGGAGGAGCTTCAATTGGTGACTCTTTGTAGAGAGCGTAAGGAGTTGATCAAAGCCGCGTCTCGCCATCGTTACGCTCTTGCTGCAGCTCACGTCACGTATTTTGAATCTCTCAAAGACATTGGCGAAGCCATAAGGAAATTTGTTGACGAAGAGATTGTGATCTCTGGTGCTGATTCTTCTTCCTCCCATGGTTCTCCTGTTCTTACACTGCCATCTGATGAAGGTAAAGGAAAGAAGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCAGAATCGGATGAGAAACACATAAACTCGTCTTCGTCTTCCTCGATTTTACATTCCGTTTCGGTTTCGGACGAGATCGATTGCTCTCACTTGCATTTATCATCTGAATCGGATTCTGAATCTGAACACAATTCTTCCGGTCCTATTCATCTTGAAGATACTCCAGTAGTACTACCAGATCAAGGTTATAGCCATCCTCCTCCTTATGTTTATCCGCCTGATTGGAGTTCTCCGACGAATACATTCGCCTATTATATGCAGAGATCAACCACTCCAGGGACAACGGTGATGTACGATGGACCGGAGACTCATACCGCTTTAGATGGGCAGTGGCCTGATCCTTCTCACAGTTATTCGCCATATCCGCAGTATGGAAATGGAGGGTTCTATGGGTTTTCAATGGGTTCACAACCTGATTATAACCTGTATAATCAGCAACAGAGGCGCCCCGCTACTCCGCCACCTCCTCCTTCTCCGCCGCAGGTCTCTGCTTGGGAATTCATGAATGTTTTTGATGGCTATGATAATGGCTACCGGGATTATAATTCAGGGAATACATATGGGTATGGTTCAATTCAGAGCAGTCCTGATTCCAATGAAGTGAGGGAGAGAGAAGGGATACCTGAATTGGAAGATGAAACGGAGCCTGAAGCTCTGAAAGAACTTAAAGAGAGGAAGAAATTGAATGTGGAGACAATGAGTAAGAATATAAATTTAGGGGAAGGGACTTCTAAGTTTGTTCCGCCTCAGAGTAGTGAGGGCAGTTCAAAATCAGTGCCATTGCCAAATTGTGGTAGCTCACCGGTATCTAAGGAGAAAGGAATGGATAACAGTCCTGATACAATTGTGTCGAGGAAATCGGAACAGGAGGAGCCAGTGGAGACAAAAGAAGTGAGTTTCGAGATTGAGGAGATGTCGACCTTAGATGTCGAATCTTCTAAGAAAAGTAATTTAGCGACATTCGCTGCGTTTGGTACAAGGGATCTTCAGGAAGTTGTAAATGAAATTAAGGATGAATTTGAAGCTGCTTCTAGCTATGGGAAAGAGGTATCAATGTTGCTTGAAGTTGGGAGATTGCCTTATCGGTCGAAGCTCACTGCACTTAAAGTTATGCTTTCTCGGATCCAGTACTCGGTGGCCCGTTCCTCGGCATCTTCTCAGCCGCCATTGATTTCGTTGGACCATAAGACGCTGAAAATGGCGAAAGCATACACTGGAGATGGCAGTCCTGGCAATGAGTTTGAGTTGAAATATGGAAGCCTTTCATCTACGTTGGAGAAGCTTTATGTATGGGAGAAGAAACTGTACAAAGAAGTTAAGGATGAAGAAAGATTACGTGTTGATTATGAAAAACTGTGCAAGAAGTTGAAAAGGTTAGATGACCATGGAGCTGATACCACTAAAATTGATGCTACTCATGCATCAATTAGGAAGATATTAACCAAGATCGACATCTGTATCAAAGCTGCTGATGCTATATCAAGCAGGATTCATAGGTTGCGGGAAGAAGAATTGCAGCCTCAACTATCTGAGCTGATTCATGGGTGGATAAAGATGTGGCGATCTATTCTAAAATGCCATCAGAAACAATTTCAAGCAGTGATGGAGAGCAAGATTCGGTCATTAAAAGCTAGAACGGGATCTAGAAGAGATGAGAGTTTGAAAGCTACAGTGGATCTTGAAATGGAACTTGTCAACTGGTGCGCTAGATTTAACGATTGGATTCGTACCCAAAAAGCTTATGTCGAATCGTTAAATGGATGGCTCCTACGATGCCTTAACAACGAGCCTGAAGAAACTGCTGATGGTATTGCTCCTTTTTCACCAGGTCGGATGGGAGCTCCACAGATTTTCATTATTTGCAATGATTGGCACCAAGCTATGCTCGAAATTTCAGAAGACAAAGTGGTTGGTGCCATTCATGGTTTTGCTTTAAACTTGCATGAGTTATGGGAAAGGCAAGATGAGGAACAACGTCAGAGGATCAAAGCCAATTTCCTTTACAAGGATTTTGAAGAACACCTTAGAACCTTAAGAATGGAGAGAGCTATGTTGAAATCTGACCAAGATGAGGCATCAGGAGGAACTGTAGTCTCAAAAATTCCTTCTGAAAGTGAAGTTTCTCAACCGGATGATCTGAAAGTTAATTTGGATTCACTGAGGAAGAAGTTATACGACGAGAGAGCAAAACACAAGGATTCCATTAAACTGGTTCACAATGCTGCTTCAAATAGCATACAGGCCGGCTTGGTTCCCATCTTTGAGGCATTGGAAAAGTTCAGTTCCGAGGTTACGAAAGCACACGAGCAAGTCAGGCTTCAAAACTCTTAG 3000 43.37 MTKINRLPVAGSTSLRLLCFCSASSSFFSFFFIQFNFSETQTSKQASRPRKKKRPNGQILLGSPPSRIPMSALYIYNIISGSGVVVDVVHDASSPSIWNRMDTAAAMIRRGGYAGVGFAVVFVTMGCGGSKVEELQLVTLCRERKELIKAASRHRYALAAAHVTYFESLKDIGEAIRKFVDEEIVISGADSSSSHGSPVLTLPSDEGKGKKMMKKKKKKKKKKAESDEKHINSSSSSSILHSVSVSDEIDCSHLHLSSESDSESEHNSSGPIHLEDTPVVLPDQGYSHPPPYVYPPDWSSPTNTFAYYMQRSTTPGTTVMYDGPETHTALDGQWPDPSHSYSPYPQYGNGGFYGFSMGSQPDYNLYNQQQRRPATPPPPPSPPQVSAWEFMNVFDGYDNGYRDYNSGNTYGYGSIQSSPDSNEVREREGIPELEDETEPEALKELKERKKLNVETMSKNINLGEGTSKFVPPQSSEGSSKSVPLPNCGSSPVSKEKGMDNSPDTIVSRKSEQEEPVETKEVSFEIEEMSTLDVESSKKSNLATFAAFGTRDLQEVVNEIKDEFEAASSYGKEVSMLLEVGRLPYRSKLTALKVMLSRIQYSVARSSASSQPPLISLDHKTLKMAKAYTGDGSPGNEFELKYGSLSSTLEKLYVWEKKLYKEVKDEERLRVDYEKLCKKLKRLDDHGADTTKIDATHASIRKILTKIDICIKAADAISSRIHRLREEELQPQLSELIHGWIKMWRSILKCHQKQFQAVMESKIRSLKARTGSRRDESLKATVDLEMELVNWCARFNDWIRTQKAYVESLNGWLLRCLNNEPEETADGIAPFSPGRMGAPQIFIICNDWHQAMLEISEDKVVGAIHGFALNLHELWERQDEEQRQRIKANFLYKDFEEHLRTLRMERAMLKSDQDEASGGTVVSKIPSESEVSQPDDLKVNLDSLRKKLYDERAKHKDSIKLVHNAASNSIQAGLVPIFEALEKFSSEVTKAHEQVRLQNS 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9815985 9820567 + CmaCh01G013850.1 Cma01g01385 287078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01385 999 MobiDBLite consensus disorder prediction 411 440 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 189 242 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 255 270 - -
Cma01g01385 999 Pfam Protein of unknown function (DUF632) 552 871 IPR006867 -
Cma01g01385 999 MobiDBLite consensus disorder prediction 255 282 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 910 935 - -
Cma01g01385 999 Coils Coil 891 911 - -
Cma01g01385 999 Pfam Protein of unknown function (DUF630) 125 183 IPR006868 -
Cma01g01385 999 PANTHER FAMILY PROTEIN, PUTATIVE (DUF630 AND DUF632)-RELATED 125 998 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 43 62 - -
Cma01g01385 999 PANTHER UNCHARACTERIZED 125 998 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 462 497 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 462 519 - -
Cma01g01385 999 Coils Coil 662 682 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 360 386 - -
Cma01g01385 999 MobiDBLite consensus disorder prediction 915 935 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01385 - - - csv:101217905 1209.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01385 Cma09g00786 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01385 Cma-Chr1:9815985 Cma19g00790 Cma-Chr19:7660344 7.93E-120 dispersed
Cma01g01385 Cma-Chr1:9815985 Cma09g00786 Cma-Chr9:3810671 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g249 . Blo12g01126 . . . Bpe04g00008 . . . . Cma01g01385 Cma09g00786 . . . Cpe06g00620 . . . . . . . . . . . . . . . Cone4ag1415 Cone7ag1523 Cone17ag1288 . Lsi04g02398 Csa04g01790 . . . . . . . . . . . Cmo01g01435 Cmo09g00777 . . . . . . Bhi09g02691 Tan01g4039 . . Hepe01g2294 . . . . . . . . . . . Chy07g00629 Cme07g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01385 Cma_Chr01 FPKM 5.210159 5.08 0.422141 0.498755 6.06306 5.813102 5.511145 0.120915 0.089773 0.151008