Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01389 ATGCATGACAGTGGAGCAACAGCTGCTGATGACAGGGATAGGGAGAGGGAGAGGGAAAAGGCAAACCTTTTGAAGGAGGACATGGACGGTTCTGCCACCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCCGGTGAGTATTCTCCTGTTGGCCAACCACCTCCTCCGATAGGTGTTGGTGCGTCTCAATCTTATGATGGACGAGAAAGAGGAGACCGGAAGGGAGTAATGATGCAGCGTGCCGGTTACCTGGACGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGAAATCGGAGAAGACGGCGGCGGAATCGTTTCCTGTGGCGGCGCCGCCGTGTAAAAAGAAGTATAAGGGTGTTAGAATGAGGAGTTGGGGGTCGTGGGTATCGGAGATTCGAGCGCCGAATCAAAAGACGAGGATTTGGTTAGGGTCTTATTCGACGGCGGAAGCTGCGGCGCGTGCTTACGACGCGGCTCTTTTATGTCTCAAAGGCACTTCTGCTAGCCTTAACTTCCCGGAAATTGCTAACTCTATTTCAATTTCCGATCACTGCCACTTCCGCCGCTTACACCACCATATTGATTCCTCCGATGCCGACATTATGTCTCCTAAGTCCATCCAGCGTGTCGCCGCCGCTGCCGCTAATGGCTTCCGGGAAAATGTCTCCTCCGCCGTTGTCACACCCCCATCCCCCGCCGTCTCGTCCCCGTCTCTCTCCTCCGATCTTCCGGACGATGAAGCGTCGATCACCGTGTCGTCCGATGGTGTCTACGATCAAATCGATCCGTCGACGGCGGAGATGGATTCATGGTGCAATTACTTTGATACCCTTCAGTCGCCGAAATTCATTGACCAAATGCTCACCGAAGCTTGGTTCGATTTCGGTTCGATTCCGGCGGCCGAAATTCCCGATTTTTACGAGGAAGAAAGCGACATCAGATTGTGGAGCTTCTGCTGA 975 53.03 MHDSGATAADDRDREREREKANLLKEDMDGSATSKRRKLKREHLSLAEAGEYSPVGQPPPPIGVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVKSEKTAAESFPVAAPPCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGTSASLNFPEIANSISISDHCHFRRLHHHIDSSDADIMSPKSIQRVAAAAANGFRENVSSAVVTPPSPAVSSPSLSSDLPDDEASITVSSDGVYDQIDPSTAEMDSWCNYFDTLQSPKFIDQMLTEAWFDFGSIPAAEIPDFYEEESDIRLWSFC 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9839911 9841930 - CmaCh01G013890.1 Cma01g01389 287082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01389 324 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Cma01g01389 324 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Cma01g01389 324 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 109 324 - -
Cma01g01389 324 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Cma01g01389 324 MobiDBLite consensus disorder prediction 1 47 - -
Cma01g01389 324 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Cma01g01389 324 Gene3D AP2/ERF domain 120 180 IPR036955 GO:0003700|GO:0006355
Cma01g01389 324 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Cma01g01389 324 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 109 324 - -
Cma01g01389 324 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Cma01g01389 324 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Cma01g01389 324 MobiDBLite consensus disorder prediction 231 250 - -
Cma01g01389 324 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01389 Cma-Chr1:9839911 Cma15g00890 Cma-Chr15:4532496 3.40E-49 dispersed
Cma01g01389 Cma-Chr1:9839911 Cma09g00801 Cma-Chr9:3917349 1.96E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34335 PF00847 AP2 1.10E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01389 - - csv:101215527 290.426