Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma01g01389 | ATGCATGACAGTGGAGCAACAGCTGCTGATGACAGGGATAGGGAGAGGGAGAGGGAAAAGGCAAACCTTTTGAAGGAGGACATGGACGGTTCTGCCACCTCCAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCCGGTGAGTATTCTCCTGTTGGCCAACCACCTCCTCCGATAGGTGTTGGTGCGTCTCAATCTTATGATGGACGAGAAAGAGGAGACCGGAAGGGAGTAATGATGCAGCGTGCCGGTTACCTGGACGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGAAATCGGAGAAGACGGCGGCGGAATCGTTTCCTGTGGCGGCGCCGCCGTGTAAAAAGAAGTATAAGGGTGTTAGAATGAGGAGTTGGGGGTCGTGGGTATCGGAGATTCGAGCGCCGAATCAAAAGACGAGGATTTGGTTAGGGTCTTATTCGACGGCGGAAGCTGCGGCGCGTGCTTACGACGCGGCTCTTTTATGTCTCAAAGGCACTTCTGCTAGCCTTAACTTCCCGGAAATTGCTAACTCTATTTCAATTTCCGATCACTGCCACTTCCGCCGCTTACACCACCATATTGATTCCTCCGATGCCGACATTATGTCTCCTAAGTCCATCCAGCGTGTCGCCGCCGCTGCCGCTAATGGCTTCCGGGAAAATGTCTCCTCCGCCGTTGTCACACCCCCATCCCCCGCCGTCTCGTCCCCGTCTCTCTCCTCCGATCTTCCGGACGATGAAGCGTCGATCACCGTGTCGTCCGATGGTGTCTACGATCAAATCGATCCGTCGACGGCGGAGATGGATTCATGGTGCAATTACTTTGATACCCTTCAGTCGCCGAAATTCATTGACCAAATGCTCACCGAAGCTTGGTTCGATTTCGGTTCGATTCCGGCGGCCGAAATTCCCGATTTTTACGAGGAAGAAAGCGACATCAGATTGTGGAGCTTCTGCTGA | 975 | 53.03 | MHDSGATAADDRDREREREKANLLKEDMDGSATSKRRKLKREHLSLAEAGEYSPVGQPPPPIGVGASQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVKSEKTAAESFPVAAPPCKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGTSASLNFPEIANSISISDHCHFRRLHHHIDSSDADIMSPKSIQRVAAAAANGFRENVSSAVVTPPSPAVSSPSLSSDLPDDEASITVSSDGVYDQIDPSTAEMDSWCNYFDTLQSPKFIDQMLTEAWFDFGSIPAAEIPDFYEEESDIRLWSFC | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9839911 | 9841930 | - | CmaCh01G013890.1 | Cma01g01389 | 287082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma01g01389 | 324 | PRINTS | Ethylene responsive element binding protein signature | 122 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | PRINTS | Ethylene responsive element binding protein signature | 144 | 160 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 109 | 324 | - | - | |
Cma01g01389 | 324 | CDD | AP2 | 120 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Cma01g01389 | 324 | Pfam | AP2 domain | 121 | 170 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | Gene3D | AP2/ERF domain | 120 | 180 | IPR036955 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | ProSiteProfiles | AP2/ERF domain profile. | 121 | 178 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 | 109 | 324 | - | - | |
Cma01g01389 | 324 | SUPERFAMILY | DNA-binding domain | 121 | 178 | IPR016177 | GO:0003677 | |
Cma01g01389 | 324 | SMART | rav1_2 | 121 | 184 | IPR001471 | GO:0003700|GO:0006355 | |
Cma01g01389 | 324 | MobiDBLite | consensus disorder prediction | 231 | 250 | - | - | |
Cma01g01389 | 324 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01389 | Cma-Chr1:9839911 | Cma15g00890 | Cma-Chr15:4532496 | 3.40E-49 | dispersed | |
Cma01g01389 | Cma-Chr1:9839911 | Cma09g00801 | Cma-Chr9:3917349 | 1.96E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34335 | PF00847 | AP2 | 1.10E-11 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma01g01389 | - | - | csv:101215527 | 290.426 |