Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01391 ATGGGACCTCAAATTTGTGCAATGCTTCATAAAATTAAGCATTATTTGGCTATGATTTCCTTGCAGTTCGGGTATGCCGGGATGTACGTCATCACCATGCTTTGCCTTAAAAAGGGCATGAACCATTACGTTCTTGCCGTGTATCGACACCTTGTTGCCACCATCGTTATTTCCCCCTTCGCTTTCGTTCTTGAGAGGAAAATAAGGCCGAAGATGACATTTCCCATCCTTGCTCGAATACTTCTCCTCGGCTTCCTCGAGCCTGTGTTGGATCAAAATCTTTACTACGTGGGGTTAAAACTTACCTCAGCAACATTCACTTCTGCTACGGTTAATATTCTCCCCGCTGTAACCTTCATTATGGCTCTCGTTTTCAGGCTGGAAACTGTGAATTTCAAGAAGATTCGCAGCATCGCAAAGGTGGCCGGAACAATGGTGACGATCGGCGGAGCCATGGTGATGACTCTATACAAAGGACCGGTGGTCGAGATCTTCCACGCCCATGGCCACCACGCCGCCCAACAAACCAGCAGCGAGTCCGCCGACCAACACTGGGTCCTCGGCACCCTCATGCTCCTCGGCAGCATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCGTTCACGTTGAAGAAGTACCCGGCCGAGCTGTCGCTGACCGCCTTGATATGCATCGCCGGCACAGTGGAGGGCTCCATTGTCACACTCATTATGGAGCGCGATTTTAGCGTGTGGGTCATCGGCTGGGACTCTCGTCTTCTTGCCGCCGTTTATACGGGTGTGATATGCTCTGGGCTTGCTTATTATATTCAAGGCGTGGTAATTCGGCAACGTGGCCCAGTTTTTGTTACCTCATTTACCCCTCTGTGCATGATTATTACTGCCTTCCTTGGCTTCGTTATTTTGGCAGAGCAAATTCACCTTGGAAGCATAATCGGAGCCTTTTTCATAGTGATGGGGCTTTACTTAGTGGTGTGGGGCAAAGCCAAGGACCATCTGAACAAATTAACCAGTCAAAAGGGCGCCGCCGCCACGGAGTTGCCACTCACCGCCGAGCCGGAAACCGCCGAGGCCGCCATCAACGAGCGTTTCTCTTCCAAAGCTCCACCGGCGTGA 1116 51.25 MGPQICAMLHKIKHYLAMISLQFGYAGMYVITMLCLKKGMNHYVLAVYRHLVATIVISPFAFVLERKIRPKMTFPILARILLLGFLEPVLDQNLYYVGLKLTSATFTSATVNILPAVTFIMALVFRLETVNFKKIRSIAKVAGTMVTIGGAMVMTLYKGPVVEIFHAHGHHAAQQTSSESADQHWVLGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICIAGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVICSGLAYYIQGVVIRQRGPVFVTSFTPLCMIITAFLGFVILAEQIHLGSIIGAFFIVMGLYLVVWGKAKDHLNKLTSQKGAAATELPLTAEPETAEAAINERFSSKAPPA 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9854965 9857189 + CmaCh01G013910.1 Cma01g01391 287084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01391 371 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020|GO:0016021
Cma01g01391 371 Pfam EamA-like transporter family 20 138 IPR000620 GO:0016020|GO:0016021
Cma01g01391 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 329 - -
Cma01g01391 371 PANTHER WAT1-RELATED PROTEIN 9 350 - -
Cma01g01391 371 PANTHER WAT1-RELATED PROTEIN 9 350 IPR030184 GO:0016021|GO:0022857
Cma01g01391 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01391 Cma-Chr1:9854965 Cma04g02354 Cma-Chr4:16332522 9.49E-131 dispersed
Cma15g01343 Cma-Chr15:8423171 Cma01g01391 Cma-Chr1:9854965 3.75E-91 dispersed
Cma15g01429 Cma-Chr15:9058282 Cma01g01391 Cma-Chr1:9854965 1.39E-80 dispersed
Cma16g00009 Cma-Chr16:62318 Cma01g01391 Cma-Chr1:9854965 2.30E-62 transposed
Cma01g01391 Cma-Chr1:9854965 Cma09g00799 Cma-Chr9:3899192 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01391 - - csv:101216002 619.772