Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01401 ATGGATGAGTCTTCGCTGCAACTTATCCACGATGTCGGAACTAAATTGAGCAAACAGTCTCGTCCAACCAAGGATTACATCGTGAAATCCCTCCGGCAAGTTGTAGATGCTTTTGCTTGTTTGGAACAGTCTTACGTCCCAGATGCTACAAGGGAGTCAGAACCAGCTAAAAAATTAGAGGGTTCTATAAAGCCTCTAATGAAATCTATAGTTAATGGTCTTTTACGGAATAGAGATAAAGATGTGAGACTTCTATTAGCTATATGCGTTAGTGAAATGTTCCGGGTCACGGCTCCAGAACCACCTTTCGAAGACAAATATCTAAGGGATGTTTTTATACTTCTTTTGAGCTCTTTTTCGGAGCTAGGTGATACAACAAGTCCACTTTTCCCTCGGAGGGTTAAAATACTAGAGACAGTGGCACGATGTAAATGCTGTGTGATAATGCTTGACATTGGATGCAACGACTTGGTGTTGGATATGTTTGATACATTTTTCTCTGCTTTAAGAGACTATCACGAACCTAGTCTGGTTAACAACATTTTGTCAATAATGACCCATATTCTAAGCGAGGATGCCTCTCTACCGCTAGTAGATGTGGTTTTGCACAATGTTGTGAAGGAGGAAAAGGGTGAACCTACAGCTGCTTCTCGCCTTGCAGTTTCCGTCATTGAAGCCAGTGCTGAGACGCTTGAACCATTTGTTTGTGGATTCTTAACATCTTGTATTTCAGAGAGAGATGTGGCGGGAAGTGAACTCAAAGAATTTTACCATGAACTAATTTTTAGAATTTTCCAATGTGTCCCTCAGATGCTTCTTCCTGTGATTCCAAACTTGACTCTAGAGCTTTTGACGGACCAAGTTGATGTTAGAATAAAAGCGGTTAAAATCGTTGGTAGGCTTTTAGCTCTACCAAAATACTCTGTAGCACAAAAGTACCGAGGACTTTTTATGGAGTTCTTGAAAAGGTTTAGTGACAAATCTGCAGAAGTTAGAATTCATGCTATCCAATGTGCTAAAGATTGTTATCTGGCCAATCCTGGTAGTTCAGAATCTCTTGAAGTTCTGGCTGCAGTCGAAGAACGATTACTAGACTTCGATGACAGAGTGAGAACTCGAGCAATAATTATTGTTTGTGATATTGCCCGATCAAATATCAAATTTGCCCCCGTGACACTAATATCTCGAGCTGCTGAAAGACTACGAGATAAGAGGATATCAGTTAGGAAAAAGGCCCTTCAGAAATTGTTGGAAGTGTATCGAGACTATTGTGATAAATGTTCCAAAGGTCAATTGACTATGAACGATGACTTTGAACAGATTCCTTGTAAAGTCTTGATGCTTTGCTATGATAAAGATTGTAAAGAGTTCAGGTCCCAGTGCATGGAACTTGTTCTTGTGGAAGATTTATTCCCAGCTCATCTCTCTCTTGAGGAAAGGACAAGCCACTGGATCCATTTGTTCTCTCTTTTCAATATCCATCATGAAAAGGCCCTCAGATATATTTTGTTGCAAAAACAGAGGTTACAAGATGAGTTGCGTACTTATTTGAGTCTACGAAAAAAGGGCAAGGAGAACCAATCAGAAGAGGTAGAAAAGCGAATTGAAACTGCATTTCTCAAAATGGCAGCCTGCTTTCCAGGTCCTACAAAAGCAAAGGAGTCCTTTCATAAATTAAATCAAATTAAAGCTGATAATATTTTTATCCCGTTGGAGCTTTTACTTGATGAATTGACAAGTGTGGAAGCTGAGGCCACCAGAGACAAATTGTTGAGGATGATAGGAAGTAAACATCCTCATTTTGAGATTTTGAAATCACTCTCCTCAAAGTGCTCATATAATTTATTCAGCACTGAGCATGTACGCTTTGTATTAGACTGCATTCTGAGTAACAGACTTGCAAATAAACATTTGGAGGCTTCTGCTGGCAAGCTCCTACTGGCTATTTTCGGCATTTTCCCCGCACTCATCAGAGGCTTGGAAGGCCAACTGCTAAGGTTGTTGGAAGAAAGCAACCCAATAGATAGTAAGCTGATCGAAGTATTGGCAAAAGCAGGCCCTCACTTATCAATTGAACTCAGTGATGCATACCCATTTCTGGAGAGATTATGCTTGGAGGGTACTCGTGCTCAATCAAAGAGTGCTGTTTCTGCCATTGCAGCTTTAGCTGGTACTTCTGGGTATTTTTTATTCTCTAAACTATGTAAGGAACTTGTTGATTCTCTACACAGGGGAATGAATCTCCCCGCAATATTGCAATCTTTAGGTTGTATTGCAAAATATTCTGTTTCAACCTTTGATGATCATGATCTAGAGATCACACCTTATGTATATGAGAAAATCCTCCAAGTGGACCTATCAGATAATTTCAATAAATTAGACGGGGATAGCAATTCTTGCGATTTAAAGATTTATGGGCTGAAAACAATCGTTAAGAGTTTTTTGCCACATCAAGGAACTCCTAGAAGAAATGTTGATGAGTTTCTGAAAATTTTATTAGGGATGCTGAACACGTGTGAAGCTTCTGTTGGGAACATCCCTACTGATAGTGATCAAGCTCGAATCAGATTAGCTGCTGCAAAATCAGTTCTTCGTCTTGCCAGAAGATGGGATTCACAAATTACACCGGAGATTTTCCGTTTTGCAATCTTGATGGCAAAGGACTCCTCTTCTTTGGTTAGAAGGCTATTTATTGACAAAGCACACAAGTTACTTAAGGAGCAGGCTATACCTACTCGATATGCTTGTGTTTTTGCATTTTGCATCTCAGATAGCTTGAAGGATCTTCAGGATGATTCACTCAAATATATGGCAGAATTTATTGAGCAATATAGGAAGATAGCTCAGATTCATCAAAATTCTGTGGGTCAAGATGGATCAGTGACCTTTGTTCCAGCGTATATAGTAGTATTCTTGATATATATTCTAGCTCATGATTCAGGCTTCCCACATACAGACTGTCAAGATGAAAATGAATATGCTCAATTCTGTAGCCCCCTCCTATTTATGTTGCAGATGTTAGTCAATGCAGATGTAATTGTTGCAAAGGATTCTGTTTTGTATTTGCACAGTATTTTTCGTGCCATTAAGAGGGTTGAGGATGCTGTGGATATTGAAACATCACCTAAGTTACACATTTTAGCGGACATTGGTCTCTCTTTTGTAACTGCTCTAAATTATTCCGGAGTCTCCCTATCATGTGCCCCAAGGCAGATTTTGCTGCCATTATCACTATATAGAGTAAATTCCAGGCAGCTTTCTCAACATGCTTTGGATGAATGTTTTATTGGAAGAGTTATTAAGACATTTCAATCTCAATTCATTTTGCCCACTATCAACCCATGTTCCTCAATAAGCATGAAAGCTTGTAAGCAAGTTGAAGCCATTTCCTCTAGAGCAACGAAGATCAATAAAACTGTGAATCAGGAGGCTATTGTTGGACGGAGGCGAAAACGGGCTGTCTCTCCAACAATGTCCTCATCAATTGAGTTGCGGGAGAGTTCTCTACTTGTTCAACAAAATTTCCCAACAAACAGAGAAAAAAGTGCATTTTCTTCTCAGTGTGAAACTACAGAAGCTTCTCTTGTTGAAGCATATGCGTCAATTCAGAGTCAGGACAATGTGTTGGCAAACAGGAACATTGATGATGAGTCTTCGATATTAGTGCCTGACTTCACATCTTGGTCGGAAATATTAGTGGAACGTCCAACTGCTGAGCTCGGAATCTGA 3729 39.69 MDESSLQLIHDVGTKLSKQSRPTKDYIVKSLRQVVDAFACLEQSYVPDATRESEPAKKLEGSIKPLMKSIVNGLLRNRDKDVRLLLAICVSEMFRVTAPEPPFEDKYLRDVFILLLSSFSELGDTTSPLFPRRVKILETVARCKCCVIMLDIGCNDLVLDMFDTFFSALRDYHEPSLVNNILSIMTHILSEDASLPLVDVVLHNVVKEEKGEPTAASRLAVSVIEASAETLEPFVCGFLTSCISERDVAGSELKEFYHELIFRIFQCVPQMLLPVIPNLTLELLTDQVDVRIKAVKIVGRLLALPKYSVAQKYRGLFMEFLKRFSDKSAEVRIHAIQCAKDCYLANPGSSESLEVLAAVEERLLDFDDRVRTRAIIIVCDIARSNIKFAPVTLISRAAERLRDKRISVRKKALQKLLEVYRDYCDKCSKGQLTMNDDFEQIPCKVLMLCYDKDCKEFRSQCMELVLVEDLFPAHLSLEERTSHWIHLFSLFNIHHEKALRYILLQKQRLQDELRTYLSLRKKGKENQSEEVEKRIETAFLKMAACFPGPTKAKESFHKLNQIKADNIFIPLELLLDELTSVEAEATRDKLLRMIGSKHPHFEILKSLSSKCSYNLFSTEHVRFVLDCILSNRLANKHLEASAGKLLLAIFGIFPALIRGLEGQLLRLLEESNPIDSKLIEVLAKAGPHLSIELSDAYPFLERLCLEGTRAQSKSAVSAIAALAGTSGYFLFSKLCKELVDSLHRGMNLPAILQSLGCIAKYSVSTFDDHDLEITPYVYEKILQVDLSDNFNKLDGDSNSCDLKIYGLKTIVKSFLPHQGTPRRNVDEFLKILLGMLNTCEASVGNIPTDSDQARIRLAAAKSVLRLARRWDSQITPEIFRFAILMAKDSSSLVRRLFIDKAHKLLKEQAIPTRYACVFAFCISDSLKDLQDDSLKYMAEFIEQYRKIAQIHQNSVGQDGSVTFVPAYIVVFLIYILAHDSGFPHTDCQDENEYAQFCSPLLFMLQMLVNADVIVAKDSVLYLHSIFRAIKRVEDAVDIETSPKLHILADIGLSFVTALNYSGVSLSCAPRQILLPLSLYRVNSRQLSQHALDECFIGRVIKTFQSQFILPTINPCSSISMKACKQVEAISSRATKINKTVNQEAIVGRRRKRAVSPTMSSSIELRESSLLVQQNFPTNREKSAFSSQCETTEASLVEAYASIQSQDNVLANRNIDDESSILVPDFTSWSEILVERPTAELGI 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9903775 9917500 - CmaCh01G014010.1 Cma01g01401 287094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01401 1242 SUPERFAMILY ARM repeat 230 952 IPR016024 -
Cma01g01401 1242 Pfam Sister chromatid cohesion protein PDS5 protein 26 1080 - -
Cma01g01401 1242 Gene3D - 214 416 IPR011989 -
Cma01g01401 1242 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 3 1181 - -
Cma01g01401 1242 Gene3D - 422 955 IPR011989 -
Cma01g01401 1242 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 3 1181 IPR039776 GO:0007064
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01401 K11267 PDS5; sister chromatid cohesion protein PDS5 - csv:101216961 1795.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01401 Cma-Chr1:9903775 Cma05g00353 Cma-Chr5:1562008 7.27E-32 dispersed
Cma13g00316 Cma-Chr13:3624874 Cma01g01401 Cma-Chr1:9903775 0 transposed
Cma01g01401 Cma-Chr1:9903775 Cma09g00792 Cma-Chr9:3837916 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g272 . . . Bda03g00009 . . Bma04g00007 . . . Cma01g01401 . . . . . . . . . . . . . . . . . . . . Cone4ag1405 . . . . . . . . . . . . . . . . Cmo01g01451 . . . . . . Cpe02g00541 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01401 Cma_Chr01 FPKM 0.198713 0.0 0.282606 0.366432 0.742734 0.675882 0.516428 0.648186 0.814072 1.375406