Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01407 ATGATGGAAAGAAGTGAACCTACATTAGTTCCAGAGTGGCTGAGAAATTCTGGAAGTGTTTCTGGGAGTGGAAATTCAGCCCAACAATTTGCATCGCCTTCTCCTAACTCAGATGTTTCTTCGCAAGCTCAATACTCGAGGAGTAGAACTTCAAAGAGCATTAGCGATATAGATAAACCGCACATTGATTTATTGGATTGGTCATCTTCGTCAAGCTCAAAGAGGAGCTCTAGTCATGTCTCTGGAAAAAATGCTTACAGTGGTTTTAATAGGAATCATCGTGATAGGGACCGTGAGAAGGAGAAAGAAACTTCAAATCTTGGGGACCCTTGGGGTCATGACTTTTCTGGCCCTCTGCCAAATACATATTCCAGTAGGGCTGATAAAGGAGCTTTGCAGCGTTCCCAATCGATGATATCTAGGAAGCAAGGTGATTTATTTCCTCAAAGAGTTGCTGTTGACTCAAAAAGTGGAGGCTATAATCGTAACCCGAACATTAATGGCTTTCATTCAGGAAGTACCATTAATGGTATCACTGATAAGGCTGTTTTTGACAAGGATTTTCCATCACTTGGATCAGAAGAAAGGCAAGGAGGACCAGATGTAGGAAGAGTATCATCTCCTGGCTTGACCACATCTGTTCAGAGCTTGACTATTGGAAATTCAACTTTCATTGGTTGGGAGGGATGGACGTCAGCTCTGGCTGAGGTGCCAACTATAGTCACAGGCAGTACAGCTGCTCCATCATCTGTTCAACCGACTGTTGCTGCTAATTCTGGGTTGGGGTCTCCAAATGCAACAACTCCACGAAAGATGGCTGAAGCTTTAACACAGGCACCAACAAGAGCTCGTGCTGCGCCTCAGTCAACTGAGTCACAGAGGCTCGAGGAATTGGCTATTAAGCAGTCCAGGCAATTAATCCCAGTAACGCCTTCAATGCCGAAAGTTTCTGTCCTTAATTCTTTTGAAAAATCCAAGTCCAAAGGAGCATCCAGAACTACTGAACTGCATGTGCCTGCCAAGGGAGGTCATCAACAGCTCCCTATTGTGCAGCATAATAGTCAATCTCTTCGAGGTGGACAAGTCAAGTCTGATTCTCCAAAGGCCTCTCATGGGAAATTCCTGGTTCTCAAACCAGTGTGGGAAAATGGTGTGTTAAAAGACAGCTCAAATCCTATTAGTAATGTCAACAGTAGAGCTCCAAATTGCCAGCCTTCTGTTGCCTCTTCAGCAACACCGAAGACTTCAAGGAACAACCTGAATCCTCCATCCTCTTTGGAGCGGAAGGCGGCGGCCTTAGATCTGAAATCAGCATCCACTTTGGAAAAGAGACCCCCTTCTCAATCGCAAAGCAGGAATGATTTCTTTAATCTCATAAAGAAGAAAACTTCCGTAAATGGTTCCACTAGTCTCCAAGATTCAGGTATTTGCACATCCCCTGTCAAGGAAAAGTCGGGGATAGTTAACGAGGAAGCAGGTGGTTCTCCAGTGCAGCCTTCTACTGTTACAGATGAGTTGATTAGCAATGGCAATATCACCGAAGAGGATCAGAGGTTTTCCAAGACCGTGAATAAAAGTTTGAGTCCTAGCATAGCATTATGTACAGATGAGGAAGAGGCTGCATTTCTTCGTTCTCTTGGATGGGAAGAAAATTCAGGAGATGATGAAGCGCTTACAGAAGAGGAGATTAATGCTTTTTATGAGCAGTACATGAAAATGAAGCCGTCATTGAAGCCGATCAGATGCAAGTTACCAGAACCCTCCAATGCTGTCTGA 1776 44.31 MMERSEPTLVPEWLRNSGSVSGSGNSAQQFASPSPNSDVSSQAQYSRSRTSKSISDIDKPHIDLLDWSSSSSSKRSSSHVSGKNAYSGFNRNHRDRDREKEKETSNLGDPWGHDFSGPLPNTYSSRADKGALQRSQSMISRKQGDLFPQRVAVDSKSGGYNRNPNINGFHSGSTINGITDKAVFDKDFPSLGSEERQGGPDVGRVSSPGLTTSVQSLTIGNSTFIGWEGWTSALAEVPTIVTGSTAAPSSVQPTVAANSGLGSPNATTPRKMAEALTQAPTRARAAPQSTESQRLEELAIKQSRQLIPVTPSMPKVSVLNSFEKSKSKGASRTTELHVPAKGGHQQLPIVQHNSQSLRGGQVKSDSPKASHGKFLVLKPVWENGVLKDSSNPISNVNSRAPNCQPSVASSATPKTSRNNLNPPSSLERKAAALDLKSASTLEKRPPSQSQSRNDFFNLIKKKTSVNGSTSLQDSGICTSPVKEKSGIVNEEAGGSPVQPSTVTDELISNGNITEEDQRFSKTVNKSLSPSIALCTDEEEAAFLRSLGWEENSGDDEALTEEEINAFYEQYMKMKPSLKPIRCKLPEPSNAV 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9947283 9951797 - CmaCh01G014070.1 Cma01g01407 287100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01407 591 MobiDBLite consensus disorder prediction 89 108 - -
Cma01g01407 591 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 2 578 - -
Cma01g01407 591 MobiDBLite consensus disorder prediction 65 88 - -
Cma01g01407 591 PANTHER C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 2 578 - -
Cma01g01407 591 MobiDBLite consensus disorder prediction 1 148 - -
Cma01g01407 591 MobiDBLite consensus disorder prediction 392 425 - -
Cma01g01407 591 MobiDBLite consensus disorder prediction 12 51 - -
Cma01g01407 591 MobiDBLite consensus disorder prediction 245 268 - -
Cma01g01407 591 MobiDBLite consensus disorder prediction 118 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01407 - - - csv:101213356 899.427
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01407 Cma09g00662 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01407 Cma-Chr1:9947283 Cma15g00714 Cma-Chr15:3444665 0 wgd
Cma01g01407 Cma-Chr1:9947283 Cma04g02327 Cma-Chr4:16187031 0 wgd
Cma01g01407 Cma-Chr1:9947283 Cma09g00662 Cma-Chr9:3137498 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g330 . . . . Bpe02g00082 . . Bma01g02637 Cmo04g02433 Cmo15g00734 Cma01g01407 Cma09g00662 . . . Cpe06g00518 . . . . . . . . . . . . . . . . . . . Lsi04g02363 Csa04g01832 . . Blo17g00198 Blo18g00201 Bda11g00747 Bda13g01502 Bpe02g01618 Bpe14g00363 Bma01g00845 Bma02g00242 . Cmo01g01457 Cmo09g00647 . . Car04g02246 Car15g00660 Cpe01g02020 Cpe02g00535 Bhi09g02636 . . . . . . Cla11g01513 Cam11g1573 Cec11g1602 Cco11g1600 Clacu11g1728 Cmu11g1547 Cre11g1963 . . Chy07g00685 Cme07g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006749 0 4 0 0 0 0 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 7 3 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01407 Cma_Chr01 FPKM 1.866445 1.711013 2.4315 2.803159 6.857697 6.403962 5.676888 6.083811 4.675926 5.626972