Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01414 ATGGCAGCCGCCATGGATTTCTATAGTGAAGGATCTCAAACAGACCACTTTGGTGGTGAATTAATGGAAGCAATTGTACCTTTTATCAAAGTTGCTTCCTCCTCCTCCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCAATTTCTCTCACTCTGTTCCTCAACAGTGCTCTAATGGCTGCTCCACTTCGATGAACTCAGAATTTTCAAATGGGTTCTCGACCCAAACCCTTATTGGGTACGAACAGCCATCTCAAATCTTCCATTTCCAAACCCCATTACCTTTTGCTTATGGGAAACCAAGCGAACAGCTGAATCAACGAACGACGCCCATGTTCCTCTGCCCCGAGGCGATCCCGATGAAGCAAGTGGGTTCATCTTCAAAACCCACGAAGCTTTACAGAGGGGTAAGGCAACGGCATTGGGGGAAGTGGGTGGCGGAGATCCGGCTGCCACGGAACCGAACTCGGCTCTGGCTTGGTACCTTCGACACTGCTGAAGAAGCTGCGTTGGCGTATGACAAGGCAGCCTTCAAGCTACGAGGGGACTCTGCCAGGCTCAATTTCCCGCACCTCAAGCACCAAGGCTCCTGTGTTGAAGGCGAGTTCGGTGCGTATAGGCCTTTACATTCCTCTGTTGATGCAAAGCTCCAAGCAATTTGTGATAACTTGGCTGCGCCGCCGCTCAAAGGCAACTCAAAGAAGTCGAGGTCCCAATCCTCCTCCTCCACGGTGGCGGAAGCGGCGGCTGTGAAGGTGGAGAGCGATGGGTCTGCAGGGTCTTCACCATTATCAGATCTTACATTCCCCGACTTCACAGAGCTGCCATGGGAACACAATCAAGCTTGGGAGAATTCAATGCTCGAGAAATATCCTTCTGAGATAGATTGGGCTTCGATCTTGCCTTCATAA 921 50.16 MAAAMDFYSEGSQTDHFGGELMEAIVPFIKVASSSSSVSSSSSSSSSSSFNFSHSVPQQCSNGCSTSMNSEFSNGFSTQTLIGYEQPSQIFHFQTPLPFAYGKPSEQLNQRTTPMFLCPEAIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCVEGEFGAYRPLHSSVDAKLQAICDNLAAPPLKGNSKKSRSQSSSSTVAEAAAVKVESDGSAGSSPLSDLTFPDFTELPWEHNQAWENSMLEKYPSEIDWASILPS 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9979547 9980467 - CmaCh01G014140.1 Cma01g01414 287107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01414 306 MobiDBLite consensus disorder prediction 231 268 - -
Cma01g01414 306 MobiDBLite consensus disorder prediction 235 251 - -
Cma01g01414 306 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 303 - -
Cma01g01414 306 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Cma01g01414 306 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Cma01g01414 306 CDD AP2 135 195 IPR001471 GO:0003700|GO:0006355
Cma01g01414 306 Gene3D AP2/ERF domain 136 194 IPR036955 GO:0003700|GO:0006355
Cma01g01414 306 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Cma01g01414 306 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Cma01g01414 306 PANTHER DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 3 1 303 - -
Cma01g01414 306 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Cma01g01414 306 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01414 Cma-Chr1:9979547 Cma05g00489 Cma-Chr5:2317976 1.12E-98 dispersed
Cma01g01414 Cma-Chr1:9979547 Cma09g00654 Cma-Chr9:3113076 4.65E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34336 PF00847 AP2 2.20E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01414 K09286 - csv:101214560 408.683