Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01416 ATGTTTCTATCTCTCTCTCCACTTGTGCATTCAAGGATTCAAGGAGTATCCATGAGTAGAGCGTCGAGTTTTTATGCATTTCTGTATCACATGGGTTCTCGAGGAAGATTACTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATGGTGATGTTATTGTCTTCCAGCCTCAAAAGGCTCAACCATCTGCAAATTCCCATGCGTCAGACTTATTTCCAGCATCAGGAGGTCCCCAAAGAATATTAAACAACCATGCGTTTTCTCATGCCTCCTCCGTATCAGGTTTTCAGCCTTTTGTTCGAAGTAAACTTGGTTCTAATCCTGAAATGGGAGAAGAACAAAAGAAAATGTCAGATCAAAATTCCAAGGTTACCTCATCATCCAAGTTAAACAATGTTGAGACTGCAACACCCACATTAGTTTCAGGTTCTAGAGACACTCAATCAGTGGAAAGGGAAGAAGGAGAATGGTCTGATGCTGAGGGTTCTGCAGATATAAATGGAGGCAGTGTTTTGCGTAAACAGTTAAGACCTTCACAAGAGCAGGGCTTACTTTCTCCTTCCCACGACGTTTCTGTGAACAATTCCTGCAACACCAAAGTTTCTGATAGTACCATAGATAAAAGTAGTAATCATGTACCTTCAATAACAGATCCAGAGCCAAATGATCGGAAAAACAACAGTATCCTAAATACAGAAAACAATGTTAAACTTGATACCTCCACAGATAGTGTTCAGGAAGAAACTGGGTTGCCTTCAAAACAAAGAGAAGTTAAGGGCATTGAAGCAAGTCATGCTATAAAATGTGCTAATAATCCTGGAAAGAGGAAAATAGATCAACATCTAGAAGCCAAGCTTGGGAAGAAGCGTAGTAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGATGGCTGGGCCTATGAAAACTTCAACGCCTCGAAGGCAAGCATTTCCACCTCCTATAACCACGCGCATTGTGAAGGAAGTTCATAGTGCAACCCAAGTTAATGAACGTGTTGGGGAAAAACAGACTGTTAATAAAGACCAGAAACAAGGTGATGTTTCAAGTCATGAAGGAGTAGGCATTTCCTCGGAATCTGGTGAATCAAAATTGGACAGTAATGGTGATATGAGTTCTGGATTACTAGCTCGGCCAAACAGGCCAAACAATGATGGAGATATCCCAGTAGAGGCACCTTTACCACCAATTCCCAGACAGGGTTCATGGAAGATACCTATGGATTCAAGGGTGCAGAGGAATATGCAGGTCTCCAATAGGAAACCAGCTATATCTAATCAAAGTTCTTCTGACCACAAGCAGATAAATAAGAAGCATCTTCCGGCCAAGAAGCAGAATTCTGTTAGTAGTCATCAAGACTCATCAGTTGAACGACTTATACGGGAGGTGACCAATGAAAAGTTTTGGCATCACCCAGAGGAAACTGAACTCCAGTGTGTTCCCGGTCGATTTGAATCTGTGGAAGAATACATCAGAGTATTTGAACCTTTGTTATTTGAGGAGTGTCGGGCTCAACTTTACAGTACGTGGGAGGAACTCTCTGAAACATTCTCAAGAGATACACATGTGATGGTTCGTGTCAAGAATATTGAAAGGAGGGAAAGAGGATGGTATGATGTAATAGTTCTTCCTGTGAACGAGTGCAAGTGGTCATTCAAGGAGGGTGATGTGGCAGTTCTTTCATGCCCCAGACCTGGTTCAGTCCGATCAAAGAGGAATAATACTATGTCTGTGGAGGATGAGGAAGACCCTGAATCTGGTGGACGTGTGGCTGGAACTGTTCGGCGACACGTTCCCCTTGACACTCGTGACCCGCCAGGCGCCATCCTGCACTTTTATGTTGGGGACTCATACGATCCTAGTAGGATTGAAGAAGATCATATAGTTAGAAAACTTCAGGCAAAGAATGTTTGGTTTTTAACAGTGCTCGGTTCTCTTGCAACAACCCAGCGAGAGTATGTTGCCCTACATGCATTTCGTCGGCTCAACATGCAGATGCAATCTTCAATCCTTCAGCCTAGTCCTGAACAATTTCCGAAGTATGAGCAACAGTCACCTGCTGTGCCTGAGTGTTTCACGCAAAATTTTGTTGAGTATTTGCATAGGACCTTCAACGGACCCCAGCTATCTGCAATCCAATGGGCAGCAACACATACAGCTGCTGGTACAAGCAGCGGGACAGTCAAGAGGCAAGAACCATGGCCTTTTACACTCGTCCAAGGTCCTCCTGGAACAGGTAAGACCCATACAGTTTGGGGAATGCTAAATGTTATCCATCTGGTTCAGTACCAGCATTACTATACTTCCTTGCTTAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGATCATGTCTCTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAGAATCTTTTCCGCACTCTTCCCACACTGTGTCCTAAACCTAGAATGTTAGTCTGTGCACCTTCAAATGCTGCAACAGATGAGCTTCTTGCACGTGTTCTTGATCGGGGGTTTATTGATGGGGAAATGAAGGTTTATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACACGTGCAGCCCAAGCAGTTTCAGTTGAGCGTAGAACAGAACAACTTTTGGTCAAAAGTAGAGACGAAGTCTTAAGATGGATGCACCAGCTAAAAGTTCGCGAAACTCAATTATCTCAGCAAATCAGTAATCTTCAGAGAGAACTCAATGTTGCTGCGGCTGCTGTTCGCTCTCAAGGATCTGTTGGTGTGGACCCTGATGTTCTGGTGGCTCGTGACCAAAATCGAGATGCATTGTTGCAAAACCTTGCTGCTGTAATAGAAGGTAGGGATAAAATTTTAGTTGAGATGTCACGCCTACTTATTTTAGAAGGCAGGTATCGATCTAACAGCAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCTAGTTTTGCCAACGAGGCCGAGATAGTTTTCACCACAGTGTCAAGCAGTGGTCGCAAATTGTTTTCTCGACTATCTCATGGTTTTGACATGGTAGTCATTGATGAGGCAGCCCAAGCCAGTGAGGTAGCTGTTCTTCCACCGCTTTCTCTTGGGGCAGCAAGGTGTGTGCTTGTTGGAGATCCCCAGCAGCTCCCAGCCACTGTTATCAGTAAAGCAGCTGGAACATTGTTGTACAGTAGAAGTCTCTTCGAAAGATTCCAGCAAGCAGGATGTCCCACTATGTTGTTATCGGTGCAGTATAGAATGCATCCTCAAATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGGCGCCTTACTGACAGTGAAAGTGTTGCTAATTTACCTGATGAGACATACTATAAAGACCCTATACTTAGACCTTACACTTTCTTTGATATTACGCATGGGCGGGAATCTCATAGAGGGGGATCTGTTTCATATCAAAATATTCATGAAGCACAATTTTGTCTTCGTTTGTATGAACATCTACAGAAAACCGTGAAGTCGTTAGTCTTGGGTAAAGTTTCAGTTGGTATAATAACACCATACAAGCTCCAATTGAAGTGCCTCCAACGTGAGTTTGAGGAGGTTCTGAACTCTGAAGAAGGGAAGGATCTATATATTAATACTGTAGATGCTTTCCAAGGTCAAGAAAGAGATGTGATTATCATGTCTTGTGTGCGTGCCTCCAGCCATGGTGTTGGTTTTGTTGCAGATATTCGTCGAATGAATGTAGCACTGACCCGAGCAAGGAGAGCTCTTTGGGTAATGGGCAATGCTAATGCTTTGATGCAGTCTGATGATTGGGCTGCGTTGATCACTGATGCGAAGTCAAGGAACTGTTACATGGATATGGAATCCCTTCCGAAGGATTTCCTCGGACAGAAGGGATCCACTCAATCTACTTTGCCTGGGAAGAACTCTTCCAACACTAGGGGCCCGAGATCAGTTCTTCCAAGACATAGGTCTCTAGATATACACGTGGAGTCAAGGTCTGGAACACCATCGGAAGATGATGAGAAATCAAACTCTTCAGTAATTACTAGGAATGGAAATTACCGGTCTTCTAAGGCTGCCGTAGAGACTTCCCCAGAAGATTTTGATCAGTCAGGTGACAAACTGAGAGACACTTGGCAATATGGTATGCAGAAAAGGCAAAGTTCTGCTGGGACAGTTGGGAAGAGAGATGTTTAA 4218 43.67 MFLSLSPLVHSRIQGVSMSRASSFYAFLYHMGSRGRLLFDLNEPPVEDNEDGDVIVFQPQKAQPSANSHASDLFPASGGPQRILNNHAFSHASSVSGFQPFVRSKLGSNPEMGEEQKKMSDQNSKVTSSSKLNNVETATPTLVSGSRDTQSVEREEGEWSDAEGSADINGGSVLRKQLRPSQEQGLLSPSHDVSVNNSCNTKVSDSTIDKSSNHVPSITDPEPNDRKNNSILNTENNVKLDTSTDSVQEETGLPSKQREVKGIEASHAIKCANNPGKRKIDQHLEAKLGKKRSRQTMFLNLEDVKMAGPMKTSTPRRQAFPPPITTRIVKEVHSATQVNERVGEKQTVNKDQKQGDVSSHEGVGISSESGESKLDSNGDMSSGLLARPNRPNNDGDIPVEAPLPPIPRQGSWKIPMDSRVQRNMQVSNRKPAISNQSSSDHKQINKKHLPAKKQNSVSSHQDSSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIRVFEPLLFEECRAQLYSTWEELSETFSRDTHVMVRVKNIERRERGWYDVIVLPVNECKWSFKEGDVAVLSCPRPGSVRSKRNNTMSVEDEEDPESGGRVAGTVRRHVPLDTRDPPGAILHFYVGDSYDPSRIEEDHIVRKLQAKNVWFLTVLGSLATTQREYVALHAFRRLNMQMQSSILQPSPEQFPKYEQQSPAVPECFTQNFVEYLHRTFNGPQLSAIQWAATHTAAGTSSGTVKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSDHVSTGSIDEVLQNMDQNLFRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEVLRWMHQLKVRETQLSQQISNLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLLILEGRYRSNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDETYYKDPILRPYTFFDITHGRESHRGGSVSYQNIHEAQFCLRLYEHLQKTVKSLVLGKVSVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWVMGNANALMQSDDWAALITDAKSRNCYMDMESLPKDFLGQKGSTQSTLPGKNSSNTRGPRSVLPRHRSLDIHVESRSGTPSEDDEKSNSSVITRNGNYRSSKAAVETSPEDFDQSGDKLRDTWQYGMQKRQSSAGTVGKRDV 1405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9993329 10001325 + CmaCh01G014160.1 Cma01g01416 287109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01416 1405 MobiDBLite consensus disorder prediction 583 599 - -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 334 464 - -
Cma01g01416 1405 Pfam AAA domain 718 1065 IPR041677 GO:0004386
Cma01g01416 1405 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 31 1369 - -
Cma01g01416 1405 Coils Coil 898 925 - -
Cma01g01416 1405 Gene3D - 1094 1299 IPR027417 -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 359 388 - -
Cma01g01416 1405 CDD SF1_C_Upf1 1096 1285 IPR041679 -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 101 259 - -
Cma01g01416 1405 CDD DEXXQc_SETX 713 1095 - -
Cma01g01416 1405 Pfam AAA domain 1072 1268 IPR041679 -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 122 148 - -
Cma01g01416 1405 Gene3D - 635 1093 IPR027417 -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 1326 1352 - -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 1301 1324 - -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 175 251 - -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 416 440 - -
Cma01g01416 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 1297 IPR027417 -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 1353 1371 - -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 1301 1405 - -
Cma01g01416 1405 MobiDBLite consensus disorder prediction 578 599 - -
Cma01g01416 1405 PANTHER DNA2/NAM7 HELICASE FAMILY 31 1369 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01416 - - K10706 cmos:111446131 2723.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01416 Cma-Chr1:9993329 Cma04g00013 Cma-Chr4:63077 8.71E-58 dispersed
Cma14g01023 Cma-Chr14:5377269 Cma01g01416 Cma-Chr1:9993329 3.37E-72 transposed
Cma17g00622 Cma-Chr17:5297127 Cma01g01416 Cma-Chr1:9993329 9.36E-98 transposed
Cma01g01416 Cma-Chr1:9993329 Cma09g00651 Cma-Chr9:3092603 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01416 Cma_Chr01 FPKM 12.290625 13.925261 7.694551 7.800039 8.851604 8.989633 9.158675 4.629608 4.141215 3.796534