Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01419 ATGAGTTCAGCTGAAGAGAAGTTTGAAACAAAGGAGGGAACTCCATCTTCAGAGGATGAGAGATACATTCACAAAGTTTCAGTTCCACCAAAGCAGAAACTGTTCCAAGAAATCAAATCTGGAGTGAAGGAAACATTCTTCCCTGATGATCCTCTCCGTTCATTCAAGGATCAAACGAATCGCCGCAAATTTATCCTCGGAATCCGGGCCGTTTTCCCTATTCTTGAATGGGGAAGAGATTACAATATCTCCAAGTTTAGAGGAGATGTCATTGCTGGACTCACCATTGCCAGTCTCTGCATTCCTCAGGATATTGGGTATGCAAAGCTTGCAAATTTGCCTCCAGAGTATGGATTATATTCAAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATTGGTCCAGTGGCTGTTGTTTCTCTCTTGTTGGGGGCAATGCTTCAAACCGAAATCGATTCGGCTACGAACGCAGAAGAATACAGACGGCTGGTTTTTACAGCTACATTCTTTGCAGGGATCACACAAACCACCCTTGGAGTTCTAAGGTTGGGATTCCTAATTGACTTCTTGTCCCATGCTGCTATTGTTGGCTTCATGGGGGGAGCTGCCATCACCATTGCTCTCCAACAGCTCAAGGGATTTCTTGGCATAAAGAATTTCACAAAGAAAACCGATATTATCTCGGTTATGCAGTCGGTATTCGGCACGATGCAACACGGATGGAACTGGCAGACAATAGTGATTGCTGCAACCTTCTTATGCTTTCTTCTATTAGCAAAATTCATTGGGAAGAGGAACAAGAAGCTGTTCTGGGTGCCTGCTATTGCTCCACTCATATCTGTTGTTCTGTCTACCCTTTTGGTTTACCTTACTCGTGCTGATAAGCAAGGGGTTGCAATTGTGAAACACATAAAGAAAGGGATCAATCCCCCATCTGTGAAAGACTTGTATTTCTCAGATCAACACCTTCTAAAAGGGCTTAAGATCGGTGCCGTGGCGGGTATGGTAGCATTGACGGAAGCCGTAGCGATCGGAAGAACGTTCGCTGCAATGAAAGACTATCAAATTGATGGGAACAAGGAAATGGTAGCAATGGGAGTCATGAATGTTGTTGGTTCAATGACTTCCTGCTATGTAGCAACAGGTTCATTCTCTCGATCAGCCGTAAACTACATGGCTGGCTGCCAAACTGCAGTATCCAACATTGTGATGTCCCTTGTAGTAGTCCTAACTCTGGCATTCATCACTCCACTTTTCAAATATACTCCAAACGCTATCCTATCTGCTATCATTATAAATGCTGTGATCAACCTGGTTGACTTGCATGCAGCGAAGTTGATATGGAAGATTGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCCTCGGTGTCATCTTTTTCTCTGTAGAGATGGGCCTTCTAATTGCGGTATCCATTTCCTTCGCCAAAATCCTTCTACAAGTTACCAGACCACGGACTGCACTTCTTGGAAAGATCCCAAGGACAACCGTTTATAGAAACATACATCAATATCCCGAAGCAACCAAAGTTCCTGGCGTTTTGATTGTGAGAGTTGATTCAGCCATTTACTTTTCCAACTCAAATTACATCAAGGAAAGGATATTGAGATGGCTGGTTGACGAGGAAGAATTAACAAAAGAGTCCTACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTAACTGACATAGACACAAGTGGCATACATGCTTTGGAAGAACTAAATGGGAGTCTCAAGAAACGAGAAATACAGGTAAAAACAGCATAA 1821 42.72 MSSAEEKFETKEGTPSSEDERYIHKVSVPPKQKLFQEIKSGVKETFFPDDPLRSFKDQTNRRKFILGIRAVFPILEWGRDYNISKFRGDVIAGLTIASLCIPQDIGYAKLANLPPEYGLYSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGAMLQTEIDSATNAEEYRRLVFTATFFAGITQTTLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKNFTKKTDIISVMQSVFGTMQHGWNWQTIVIAATFLCFLLLAKFIGKRNKKLFWVPAIAPLISVVLSTLLVYLTRADKQGVAIVKHIKKGINPPSVKDLYFSDQHLLKGLKIGAVAGMVALTEAVAIGRTFAAMKDYQIDGNKEMVAMGVMNVVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSLVVVLTLAFITPLFKYTPNAILSAIIINAVINLVDLHAAKLIWKIDKFDFVACMGAFLGVIFFSVEMGLLIAVSISFAKILLQVTRPRTALLGKIPRTTVYRNIHQYPEATKVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEELTKESYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQVKTA 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10010272 10014499 - CmaCh01G014190.1 Cma01g01419 287112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01419 606 ProSitePatterns SLC26A transporters signature. 115 136 IPR018045 GO:0008271|GO:0008272
Cma01g01419 606 PANTHER HIGH AFFINITY SULFATE TRANSPORTER 2 15 603 - -
Cma01g01419 606 ProSiteProfiles STAS domain profile. 518 606 IPR002645 -
Cma01g01419 606 TIGRFAM sulP: sulfate permease 73 605 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma01g01419 606 Coils Coil 554 574 - -
Cma01g01419 606 Pfam Sulfate permease family 86 466 IPR011547 GO:0016021
Cma01g01419 606 Pfam STAS domain 519 603 IPR002645 -
Cma01g01419 606 CDD STAS_SulP_like_sulfate_transporter 519 603 - -
Cma01g01419 606 PANTHER SULFATE TRANSPORTER 15 603 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma01g01419 606 MobiDBLite consensus disorder prediction 1 22 - -
Cma01g01419 606 Gene3D STAS domain 498 606 IPR036513 -
Cma01g01419 606 SUPERFAMILY SpoIIaa-like 520 603 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01419 Cma-Chr1:10010272 Cma19g00268 Cma-Chr19:1918558 0 dispersed
Cma01g01419 Cma-Chr1:10010272 Cma15g00724 Cma-Chr15:3515599 0 wgd
Cma01g01419 Cma-Chr1:10010272 Cma04g02315 Cma-Chr4:16105844 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01419 K17470 - csv:101207370 1028.08