Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01421 ATGGAAAAGACAGCTGGGTTCTCTTTTTGTGGGTTTATGAGATGGATTTTCCAGCCACGATGCAAGTGGTTTAAGAAATCCTCTGTTCATTCATTACCCACAAATACCTCTGAAAATTGCTCTGTTTCTGATGATGCCAAGACGCCATTGGAACAAGATCGAAGAACCCACCAAAAACCCACTTTGGATCAACCAAGACCTTCGATTTCTCACCAGAAGAATCAAAGTCGGAGGCCTTCCGATGCTGCAAGAATCTCGTTAAGTAATGGGTCAGTTTTGGGTAATTTGAAGCCAATTGGATCGACAAACAACAGTCCAAGGAATCGACAAGAGATGAATTCAAGTCCAAAACTTAGAGGAAATGGCAACATGGGGAACATTATGAGGGGAAATTCATGTGCATTTCGACATGTTCAAGGCGTTAGATTAAAGCCGGATGAGTTGAAATCCATGGGAAATGAAGCTTACAAACAGGGGAAATTCGAAGAAGCATTAGCTTTGTATGACAGAGCAATAGCTTTAGATTCAGAGAATCCTGTTTATTATAGCAACAAAGGAGCTTCTTTGATTGCCTTGCACCGTTTCATGGAAGCCATTGAAGAATGCAAGAAGGCATTAAGGATTCAGCCATCATATCAAAGAGCCCATCATCGTTTAGCCACTACCTATCTCAGAATTGGGGAGCCTGAGAAAGCATTGGCTCACTTGGAACAATCAGGCCCTTACAGTGACATAAACGACATGAACAGAGCCTGTGTTCTTCAGAGCTGTTTGAGTAAGTGTATTGAAGCAAGGAAGCTACAAGAATGGGACACTCTGTTAAAAGAGACCAAATGGGCAATTTCCTCTGTTTCAGATTCAGCTTATAAGCTCTACGCTTTGCAAGCTGAGGCCTTGTTGAAGCTCCATAGATATCAAGAGGCTTATGCCATTTACCAAAAGGGTCAAACCCTCGAACCAAATTTGCTAACCAAGTCATTTAGTGTAGCTGATAGTGCACTTATTTTATCCATTGAGGCACAAGTTTACACGACAATGGGCAGGTTTGAGGAAGCTATGGCAGCAGCAGAACGATCAACAAGGCTTGATCCAACTAATATGGAAGCAAACAGAGTTGCAAAATGGGCTAAACTTGTTTCATCAGCTAGATTGAGAGGCAATCTTCTCTTCAAGGAATCAAGATTTCCAGAAGCCTGTACTGCATACAGTGAAGGATTAGAACACGACCCGTATAACTCGATTTTGCTATGCAACCGAGCAGCATGTCGATTGAAGCTGGGGCGGTACGAGAAAGCTGTTGAAGATTGCACTGCAGCTCTTATGACACAGCCATGCTACAGCAAAGCCAGACACCGCAGAGCTGATTGCAATGCAAAAATGGAGAGATGGGAGGCTTCAATTCAAGATTACGAGGTGTTGATAAGAGAGAGACCAGGAAATGAGGAAGTGGGGAGGGCTCTGTTTGAGGCGCAGCTCCAACTCAGGAAGCAACATGGGGAGGACATCAAAGACTTGAAATTTGGGTGTAATTTGGTGTGTATTTCAAGTTATGAGCGTTTTAGGCACTTTGTTACCTCTCCTGGGATGTCGGTGGTTCTGTTTTGCAACAAAAGCTACCAGAAAGAGGGGCTTGAAGTGTTTGAGTCGGTTTACGAGCGGTTTCCGTGGCTAAACTTCCTAAAGGTGGAGGTAGAAGACCATCCTTATTTGGTGAAGTTGGAGGAGGTGAGGTCCATTCCAGCTTTCAAGATATACAGAAATGGGAGAATAGTGAAGGAGATTCCAGGCTCTAAACCCCATTCATTAGAGAGTTTAGTGAAGTTGTACAGCAGTTGA 1836 43.46 MEKTAGFSFCGFMRWIFQPRCKWFKKSSVHSLPTNTSENCSVSDDAKTPLEQDRRTHQKPTLDQPRPSISHQKNQSRRPSDAARISLSNGSVLGNLKPIGSTNNSPRNRQEMNSSPKLRGNGNMGNIMRGNSCAFRHVQGVRLKPDELKSMGNEAYKQGKFEEALALYDRAIALDSENPVYYSNKGASLIALHRFMEAIEECKKALRIQPSYQRAHHRLATTYLRIGEPEKALAHLEQSGPYSDINDMNRACVLQSCLSKCIEARKLQEWDTLLKETKWAISSVSDSAYKLYALQAEALLKLHRYQEAYAIYQKGQTLEPNLLTKSFSVADSALILSIEAQVYTTMGRFEEAMAAAERSTRLDPTNMEANRVAKWAKLVSSARLRGNLLFKESRFPEACTAYSEGLEHDPYNSILLCNRAACRLKLGRYEKAVEDCTAALMTQPCYSKARHRRADCNAKMERWEASIQDYEVLIRERPGNEEVGRALFEAQLQLRKQHGEDIKDLKFGCNLVCISSYERFRHFVTSPGMSVVLFCNKSYQKEGLEVFESVYERFPWLNFLKVEVEDHPYLVKLEEVRSIPAFKIYRNGRIVKEIPGSKPHSLESLVKLYSS 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10016227 10019346 - CmaCh01G014210.1 Cma01g01421 287114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01421 611 SUPERFAMILY Thioredoxin-like 455 603 IPR036249 -
Cma01g01421 611 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 95 609 IPR044534 -
Cma01g01421 611 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 9 84 IPR044534 -
Cma01g01421 611 ProSiteProfiles TPR repeat profile. 333 366 IPR019734 GO:0005515
Cma01g01421 611 SUPERFAMILY TPR-like 145 369 IPR011990 GO:0005515
Cma01g01421 611 SMART tpr_5 145 178 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 447 480 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 379 412 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 179 212 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 289 322 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 333 366 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 213 246 IPR019734 GO:0005515
Cma01g01421 611 SMART tpr_5 413 446 IPR019734 GO:0005515
Cma01g01421 611 SUPERFAMILY TPR-like 382 497 IPR011990 GO:0005515
Cma01g01421 611 MobiDBLite consensus disorder prediction 32 125 - -
Cma01g01421 611 Pfam TPR repeat 152 188 - -
Cma01g01421 611 MobiDBLite consensus disorder prediction 32 46 - -
Cma01g01421 611 Gene3D Glutaredoxin 509 610 - -
Cma01g01421 611 MobiDBLite consensus disorder prediction 62 125 - -
Cma01g01421 611 Pfam Tetratricopeptide repeat 340 366 IPR019734 GO:0005515
Cma01g01421 611 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 9 84 - -
Cma01g01421 611 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 95 609 - -
Cma01g01421 611 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Cma01g01421 611 CDD TRX_family 518 607 - -
Cma01g01421 611 MobiDBLite consensus disorder prediction 47 61 - -
Cma01g01421 611 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Cma01g01421 611 Gene3D Tetratricopeptide repeat domain 145 499 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01421 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 905.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01421 Cma09g00648 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01421 Cma-Chr1:10016227 Cma04g00803 Cma-Chr4:4106708 1.48E-133 dispersed
Cma06g00760 Cma-Chr6:3852576 Cma01g01421 Cma-Chr1:10016227 1.12E-06 dispersed
Cma10g01032 Cma-Chr10:5619791 Cma01g01421 Cma-Chr1:10016227 3.14E-10 dispersed
Cma16g01053 Cma-Chr16:8056640 Cma01g01421 Cma-Chr1:10016227 9.15E-07 dispersed
Cma01g01421 Cma-Chr1:10016227 Cma09g00815 Cma-Chr9:4002602 2.33E-131 wgd
Cma01g01421 Cma-Chr1:10016227 Cma09g00648 Cma-Chr9:3078336 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01421 Cma_Chr01 FPKM 10.242021 11.754725 0.276354 0.226246 1.698829 1.133129 1.321678 0.0 0.0 0.0