Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01427 ATGAAGAGAAAATGGGAAGAACCACGAGGAGGAAGCTTCAATTCTCCAGCTGATATCGAGCTCCACCTCGAGTCTCCGTTACCTTTAGAGTGGCAACGATGCCTTGACATTCAGTCAGGGAAGATACACTTCTACAACACGAAGACTCGGAAGAAAACGTGCATGGATCCAAGGAGCAAATTGGAGCCTAGACCAGGTGGTGATCCCTTGAGCTTGGACCTTGAGCTGAATCTAAATAGCCAATCTATGAGAAATGGAGGTGAATCAAAGAAGAAGAGCGATGGGGCTATGGCTAGTTTGGGAAGGGCATGGAAACAAGGACATGGGTGTCCGCAGCAAGAGATGATAGCGAGGCGCTACGTGAAGTTACCTGTATTTCCTGCTCCAAGCGGTGTTCACTCTGAGCAGATCATGGAGGGAGTCGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAAAACTGCCTTTCGATGTGCGAAAGCAGCGTTTCTGATTTCTTCGTTCAAATCCTTCCAGAATCGCAACCTCAGAGCATCTGTCGACGAACAAGCGAAGGAGAAAGAGAGGCTGAGGAAAGTTGTTGGAGATTTGAAGATCGAGTTGGCTATGGAGCGTCGGAGGAATAAGAGGATCAAGCTGTGCGGTTTGATGGAATTCGTTCTTCAGCTCTTGCTGCTTATTTCTCTCTCGAGCTTCTTCCTTTATATCGCCTTCAAATCTATCTGA 726 47.66 MKRKWEEPRGGSFNSPADIELHLESPLPLEWQRCLDIQSGKIHFYNTKTRKKTCMDPRSKLEPRPGGDPLSLDLELNLNSQSMRNGGESKKKSDGAMASLGRAWKQGHGCPQQEMIARRYVKLPVFPAPSGVHSEQIMEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDLKIELAMERRRNKRIKLCGLMEFVLQLLLLISLSSFFLYIAFKSI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10044736 10047359 + CmaCh01G014270.1 Cma01g01427 287120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01427 241 Coils Coil 173 200 - -
Cma01g01427 241 PANTHER F16L1.2 PROTEIN 15 90 - -
Cma01g01427 241 SUPERFAMILY WW domain 25 59 IPR036020 GO:0005515
Cma01g01427 241 ProSiteProfiles WW/rsp5/WWP domain profile. 25 59 IPR001202 GO:0005515
Cma01g01427 241 Gene3D - 22 64 - -
Cma01g01427 241 PANTHER BOMB/KIRA PROTEINS 15 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01427 - - - mcha:111009432 145.206
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01427 Cma12g00155 CCT
Cma01g01427 Cma05g00498 CCT
Cma01g01427 Cma09g00645 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01427 Cma-Chr1:10044736 Cma12g00155 Cma-Chr12:679891 9.84E-29 dispersed
Cma01g01427 Cma-Chr1:10044736 Cma09g00645 Cma-Chr9:3054754 7.82E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g403 . . . Bda03g00491 Bpe02g00104 Bpe04g00447 . . Cmo05g00521 Cmo12g00120 Cma01g01427 Cma09g00645 . Car12g00144 Sed12g1409 Cpe06g00505 Cpe07g00131 Bhi04g00753 Tan02g2385 Cmetu04g1514 . Hepe10g0502 . Lcy13g1567 Cla08g01105 Cam08g1558 Cec08g1132 Cco08g1258 Clacu08g1260 . Cre08g1042 Cone4ag1342 Cone7ag1589 Cone17ag1221 Cone20ag0502 Lsi04g02344 Csa03g04565 . Cme03g01868 Blo17g00121 . . Bda13g01404 . Bpe14g00451 . Bma02g00144 . Cmo01g01475 Cmo09g00628 Cma12g00155 Cma05g00498 Car05g00446 Car09g00572 Cpe11g00436 . . . . . . . . Cla11g01495 Cam11g1551 Cec11g1583 Cco11g1579 Clacu11g1709 Cmu11g1528 Cre11g1944 Lsi08g00961 Csa02g02146 Chy03g01372 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014939 0 0 0 0 0 0 1 0 0 1 1 0 1 1 1 1 0 1 1 0 1 1 1 0 0 1 1 1 1 0 16
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01427 Cma_Chr01 FPKM 0.0 0.0 0.308477 0.0 5.242862 5.314331 3.964241 0.0 0.230625 0.0