Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01428 ATGGAGAAGCTCGGATTTCCAAGCGTGAAGAGGTTAAACCAGTTGAACTCACTGTCTGGTTTGGTACAAGGAACTGCGAAAACGTTCTCCTCTTCGCGTTCCGTTCCAGAACCCGCCTCGTCGGGACGTTTTGTCAATTTGAAGATTGCTGCAGAGAGGATGATGAAAGATCAGGCTTCTTTGAAGACTGATCTGGATATGGCGAATGCGAAATTGAGGAAATCAGTGGAGCACACACGTGCTTTAGAGGATAAACTGCAGAATGCCTTGAATGAAAATGCCAAGCTCAAGGTGAAGCAGAAAGAAGACGAGAAGTTGTGGAAGGGATTGGAAACGAAATTCTCGTCGGCTAAGACACTGAGTGATAAGCTCTCCGAAACATTACAGATTTTAGCAAGTCAAGTTCAGGATGCTGAGAAAGACAAGGAGGTTTTAGAAGCCAAATTATCTTCAAGTTCTACAGCTGTTGATGGGTTAAACCAAAGAATGCAAGACTTGTGTATAAAAGTAGAATCTGGTGAAGAAACAATAAGAAATCGTGAGAAGGCGCTGGCGAAGCTCAAAATTGAGAAAGAGGAGAATTGTAAATTGTACAGAGAAGAACAGCAGAGAACTGCAAATCTGATTGAGGAAAAAGACTCTATGATCAAGAGATTTGAAGAAACAGTTGTGGAGAACAGGTTGATCATAGAGGGACTGAACTCTAAACTGGATGAGGCACAATTAGAGTCAAACTCGAAAGAAGAAAAAATTATTAGTTTGATAGCCTCACGAGATGACTTGCAGAAGGAAAAGAGTGATTTGGAAATGCATAATGATGAGATTCATAAGAAATTAGATGCGTCACTCTTGGAGATCAAAAACCTTGAGAATCTCGTCCATTTTTTGATTGATCAGCTGGTTGAATTTGATCGTCATAACTCAACTTTTGAAGAGAAATTTAATCAGCTAACCCATCTAAATGACTCTTGCTTTAAGCTGGCCAATTTGGAAAGGGGTTTTGCTTCGGAGCTGGCCCAAAAGAAATACAACGACCTCCATGAAAAATTTATTTGTGTAACATCAGAAAAAAATGCCCTCGAATTGATTAATGTCGAATCACAACAAAAGGTTGATGAACTTCAGAAAATCCAGGAATCACTAATGGCACAGCATTCAGAAGAATCTCGTTTAGCAGGAGGGAGAATTCAGAAGTTGGAGTCTGAAGTAGAAACTCTTGTTTCTGAAAAAACTGAGACAGAATCATTGGTTTCCAAGTTAGAGGAGAAAATTGGTACTTTGTCAGAAAGTTCAAGATCATCTGAGAGTAAAATGCAAGATTTGTTAAAGAAGATTTCTGCACTAGAAATTGAGAATCAATGTAATGCAGAAAAATTGGAGAAAGAGTTACACGATAAAGCAGAAGAGATAGATACTTTGATGAAGGAGAGCAAAAATTATAAACAACGTGCAGAAATGCTTGAGGTAGAAGGAGATCAACTTCGCAATGTTTTGAAGGAAAAGGAAGAGTTTATTCTTTTGTCTATGGATCGTGAGAAGAAGCTAGAAGAAGAAAATAAAGAGAACCAAGCTCTACTGTTTTCTGCTGAAATGAAGCTTTCCGATGCTAAAAGACAGTATGATTCAATGCTGGAGAGTAAACAGATGGAGCTATCAAGACATTTGAAAGATATATCTCATAGAAATGATCAGGCTATCAATGACATCCGGAACAAGTATGAAATGGAGAAATTGGAGATTGTTAACAAGGAAAAGGAAAAGGCAGATCAAGTTTTACAAGAGATGGAAAGAAATTGTGAACAAAGCCTAGCAGAAGTGAAAGAAGAATCTAGGAAATGCCTGATTCGCATTCAGGAAGAACATGCTGCTCTGTTGAGTCAAATTCAGCAAGAGCATACCAGAAATGAACAAATGTGTAAAGCCAAACACAATGACGAGTTGCAGCGTGCTCAACTTCATGCTGAGAACGAATTGAAAGAGAAATTGACGTCACTGAGAAGTGAACATGAGGCTCAGATGAAAGCTTTGAGATGTCAAAACGAAGATGAATGTAGGAAGCTTCAAGAGGAATTGGATCTCCAAAAAACCAAAGAAGACAGGCAGAGAGCTTTGTTGCAATTGCAATGGAAAGTGATGGGTGACAAGCTACAAGAGGACCAAGAAGTGAATTCAAAGAAGGACTACTCCATGTCATCAATCAAGATGAGAGGTTCGGGTGGTTCCAGAAAAAGCAAGCGTGCTCTGATTAGAACAGAAAATGATGAGGAATCACCTAACCAGCAAGCAACTCAAACACCAGTATCACAGTTGTTGAAGACCGTGGAGGACATAAACACAGGAAGTATTGCAAATATCCCGAAGCACCATAAGAAGGTTACTCGTCATGAATATGAAGTTGAAACTACAAATGGAAGGACGATCACTAAAAGAAGAAAAACAAAAAGTACAGTTCTGTTTGAGGACCCGAGAAAACATAACAAAACTCCAAGAAGAAATACCCCCCGAGGTCCTGTCAAGACAATCAAGGGTGGGGATCAATCACGGCCTTCAAACATTGGTGATTTGTTTACGGAAGGGTCACTGAATCCCTATGCAGATGATCCTTATGCATTTGATTAG 2619 39.44 MEKLGFPSVKRLNQLNSLSGLVQGTAKTFSSSRSVPEPASSGRFVNLKIAAERMMKDQASLKTDLDMANAKLRKSVEHTRALEDKLQNALNENAKLKVKQKEDEKLWKGLETKFSSAKTLSDKLSETLQILASQVQDAEKDKEVLEAKLSSSSTAVDGLNQRMQDLCIKVESGEETIRNREKALAKLKIEKEENCKLYREEQQRTANLIEEKDSMIKRFEETVVENRLIIEGLNSKLDEAQLESNSKEEKIISLIASRDDLQKEKSDLEMHNDEIHKKLDASLLEIKNLENLVHFLIDQLVEFDRHNSTFEEKFNQLTHLNDSCFKLANLERGFASELAQKKYNDLHEKFICVTSEKNALELINVESQQKVDELQKIQESLMAQHSEESRLAGGRIQKLESEVETLVSEKTETESLVSKLEEKIGTLSESSRSSESKMQDLLKKISALEIENQCNAEKLEKELHDKAEEIDTLMKESKNYKQRAEMLEVEGDQLRNVLKEKEEFILLSMDREKKLEEENKENQALLFSAEMKLSDAKRQYDSMLESKQMELSRHLKDISHRNDQAINDIRNKYEMEKLEIVNKEKEKADQVLQEMERNCEQSLAEVKEESRKCLIRIQEEHAALLSQIQQEHTRNEQMCKAKHNDELQRAQLHAENELKEKLTSLRSEHEAQMKALRCQNEDECRKLQEELDLQKTKEDRQRALLQLQWKVMGDKLQEDQEVNSKKDYSMSSIKMRGSGGSRKSKRALIRTENDEESPNQQATQTPVSQLLKTVEDINTGSIANIPKHHKKVTRHEYEVETTNGRTITKRRKTKSTVLFEDPRKHNKTPRRNTPRGPVKTIKGGDQSRPSNIGDLFTEGSLNPYADDPYAFD 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10048574 10054931 - CmaCh01G014280.1 Cma01g01428 287121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01428 872 Coils Coil 566 612 - -
Cma01g01428 872 Coils Coil 431 451 - -
Cma01g01428 872 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 1 865 - -
Cma01g01428 872 Coils Coil 230 250 - -
Cma01g01428 872 MobiDBLite consensus disorder prediction 807 827 - -
Cma01g01428 872 Coils Coil 170 190 - -
Cma01g01428 872 Coils Coil 121 155 - -
Cma01g01428 872 PANTHER SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED 1 865 - -
Cma01g01428 872 MobiDBLite consensus disorder prediction 807 872 - -
Cma01g01428 872 Coils Coil 456 490 - -
Cma01g01428 872 Coils Coil 640 686 - -
Cma01g01428 872 Coils Coil 396 423 - -
Cma01g01428 872 Coils Coil 258 292 - -
Cma01g01428 872 MobiDBLite consensus disorder prediction 719 766 - -
Cma01g01428 872 Coils Coil 364 384 - -
Cma01g01428 872 Coils Coil 72 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01428 - - - cmo:103503590 1332.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01428 Cma09g00644 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01428 Cma-Chr1:10048574 Cma09g00644 Cma-Chr9:3040284 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g405 . . . . Bpe02g00105 . . Bma01g02614 . . Cma01g01428 Cma09g00644 . . . Cpe06g00504 . . . . . . . . . . . . . . . Cone4ag1340 Cone7ag1590 . . Lsi04g02341 Csa03g04563 . . . . Bda11g00764 . . . . . Sed04g0532 Cmo01g01476 Cmo09g00627 . . . Car09g00570 . Cpe02g00520 Bhi09g02606 Tan01g3955 Cmetu04g1898 . Hepe01g2232 Mch11g0782 . Cla11g01493 Cam11g1549 Cec11g1582 Cco11g1577 Clacu11g1708 Cmu11g1527 Cre11g1942 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004016 1 6 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01428 Cma_Chr01 FPKM 0.672549 0.585665 0.0 0.0 0.800296 1.09662 1.455292 0.155212 0.243069 0.0