Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01429 ATGGCCACATACGATTATGATGACTCACGGGCCAACTACGACGACCCCCGTCACGCGCCGGTGCCTTCTCCGGCTGGCCAAGATATTGGCTACGACCCTAATTTCGTACCAGATTCCGTCAAATCCTTTGTCGTTCATCTATACCGCCATATCCGTGAGAAGAATGTATACGAAACACATCAAATGTATGAAACTTCATTCCAGACGCTATCGGACCGCCTATTCAAGGATACACCGTGGCCGTCAGTAGATGCTGTGGCTCATTTTGTTGATAATGATCATGTCTTCTGCTTGCTTTACCGTGAGATGTGGTTTCGCCATCTTTATGCGAGACTGTCGCCAACTTTGAAGCAGAGGATTGACTCATGGGATAACTATTGTAGCCTATTTCAGGTGGTTTTGCACGGAATCGTGAATATGCAATTGCCTAACCAGTGGCTATGGGATATGGTGGATGAGTTTGTTTATCAGTTCCAGAGCTTCTGCCAGTACCGGGCTAAGATGAAGAACAAGACCGAGCAGGAAATTTCGCTTCTGAGGCAGTACGATCAGGCTTGGAATGTATATGGTGTGCTCAACTATTTGCAAGCATTTGTGGAGAAATCATCAATCATTCATATTCTTGAGGAGGAGAAAGGTCTTGAACAATTTACACTTAATGATGGGTATGACTATAGTGGTGGGAGTAGTAATGTTTTGAAGGTGTTGGGATATTTCAGCATGGTTGGATTGCTTCGGGTTCATTGCCTGTTAGGTGATTATCACACTGGTTTGAAGTGCTTACTCCCAATTGACATAACCCAGCAAGGTGTTTTCACTAGTGTGATTGGAAGTCATATTACAACTATATATCATTATGGGTTTGCCAACCTGATGTTGCGCAGGTACGTCGATGCCATTCATGAATTTAACAGAATTCTCTTGTATATTTATAAAACCAAGCAATATCATCAAAAATCTCCTCAGTATGAGCAGATTCTGAAGAAGAACGAGCAGATGTATGCTCTGTTGGCAATATGTGTTTCGCTTTGCCCACAAGTGAAGCTTATTGATGAAACTGTGAACTCTCAGTTGCGAGAAAAGTATGGTGAAAAGATGATGAGGATGCAGAGATATGATGAAGAAGCTTTTGCCATCTATGATGAACTTTTCTCATATGCTTGTCCGAAGTTCATTACTCCATCTGCTCCTAGTTTTGAGGAGCCTCTAGCAAACTACAACCAGGATGCCTATAGGCTTCAATTGAAACTATTTCTTTTTGAAGTAAAGCAACAACAATTTCTATCTGGCATCCGCACCTTCTTGAAAGTGTACTCCACCATCTCCCTTGGGCAGCTTGCCATTTACATGGAAATGGATGAATCGACTCTAAGGACGATATTGTTGACATACAAGCATAAAACCCATGCCGTTGACAGTGTTGGAAAAATTATGTCCAATGCAGATGTGGATTTTTACATTGATGATGACGTAATTCACGTTGTCGAATCGAAGCCTGTAAATCGCTATGGAGATTTCTTCTTGCGGCAAATTGTCAAACTCGAGGGGATGATTAATGATTTGGACAGAGTGAAACTGGACTGA 1584 42.23 MATYDYDDSRANYDDPRHAPVPSPAGQDIGYDPNFVPDSVKSFVVHLYRHIREKNVYETHQMYETSFQTLSDRLFKDTPWPSVDAVAHFVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLHGIVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEISLLRQYDQAWNVYGVLNYLQAFVEKSSIIHILEEEKGLEQFTLNDGYDYSGGSSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDITQQGVFTSVIGSHITTIYHYGFANLMLRRYVDAIHEFNRILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICVSLCPQVKLIDETVNSQLREKYGEKMMRMQRYDEEAFAIYDELFSYACPKFITPSAPSFEEPLANYNQDAYRLQLKLFLFEVKQQQFLSGIRTFLKVYSTISLGQLAIYMEMDESTLRTILLTYKHKTHAVDSVGKIMSNADVDFYIDDDVIHVVESKPVNRYGDFFLRQIVKLEGMINDLDRVKLD 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10055869 10059992 - CmaCh01G014290.1 Cma01g01429 287122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01429 527 Pfam RNA polymerase I-associated factor PAF67 118 513 IPR019382 GO:0003743|GO:0005737|GO:0005852
Cma01g01429 527 Hamap Eukaryotic translation initiation factor 3 subunit L [EIF3L]. 21 516 IPR019382 GO:0003743|GO:0005737|GO:0005852
Cma01g01429 527 MobiDBLite consensus disorder prediction 1 30 - -
Cma01g01429 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 28 527 IPR019382 GO:0003743|GO:0005737|GO:0005852
Cma01g01429 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT L 28 527 - -
Cma01g01429 527 ProSiteProfiles PCI domain profile. 302 501 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01429 K15029 EIF3L; translation initiation factor 3 subunit L - csv:101216140 1048.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01429 Cma09g00644 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01429 Cma-Chr1:10055869 Cma09g00644 Cma-Chr9:3040284 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g323 . . . . Bpe02g01192 . . . . . Cma01g01429 . Car09g00569 . . . . . . . . . . . . . . . . . . Cone4ag1529 Cone7ag1424 . . Lsi04g02340 Csa03g04562 Chy04g00141 . Blo17g00057 Blo18g00071 Bda01g00946 . Bpe14g00530 . Bma01g01336 . . Cmo01g01477 Cmo09g00626 Cma09g00644 . . . . Cpe02g00519 Bhi09g02607 . . . . . . . . . . . . . . . . Cme04g00165
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004124 1 1 2 1 2 2 2 2 2 1 1 1 1 1 1 2 2 2 2 2 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01429 Cma_Chr01 FPKM 16.896654 15.774858 17.334419 16.75036 15.071232 18.963055 15.930079 21.073462 18.157261 20.165216