Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01430 ATGAATGCTCTGCAGTCTCTTCTCAAACCCATTCCTCAGTCACCGATCAGCGGTGCAGAACTCACTGCCCATTCTCAAAGGCCGCTAGGCAAATCCTGCAATTCTCGGCAGTGGTCTTTTAGAAGATTCAGGATTAGGTGTTCGATTGCTGATACCGTTGATCGTTCTTCTGATGCTCCAGTGCTTGGTAGTTCACAGGTGCTTGAAAGATTAAGGGCAAGCCGAGAGAATCAAGAAAACCAGCCACAATTCCTTGCAATGTATTCCAGTGTTGTTGGGGGAATTACGACAGATCCAGCTGTTATGGTAATTCCAATTGATGACCACATGGTTCATCGGGGACATGGCGTTTTTGATACTGCTGCCATAGTGGATGGGCATCTCTATGAGTTGGATCAGCACCTCGACCGCATTTTAAGATCAGCATCCATGGCAAAAATCAACCTCCCAGTTTCATATGATCGAGAGAAGATTAAAAATATACTCATAAGAACTGCCAGTGCTTCTAAGTGTAGGAATGGACAGCTTCGATATTGGCTCTCTGCAGGACCTGGAAATTTTCTACTATCTACTTCTGGATTGCATCAGCCAGCCCTTTATGCAATTGTAATTCAAGGTAAGCCGCCATCTCCTCCAAAAGGCATCAAAGTCATAACTTCATCAATCCCAATGAAACCACCTCAATTTGCAACTATGAAGAGTGTAAATTACCTTCCAAATGTTCTTTCAAATATGGAAGCAGAAGAAAAGGGTGCTTATACAGCCATTTGGTTGGATAGTGAGGGATTCATTGCTGAAGGGCCTAGTATGAACGTTGGTTTTATTACAAAGGATAAGGAGTTTCTGATGCCTCACTTTGACAAAATTTTAAGCGGCTGCACAGCTAAGAGAATCATAACTCTCGCTGAGCGGCTGGTGAAAGAGGGTAGGCTTCGGAGTATAAGATTTGAAAATTTAACCATGGAGGAAGGCAAGAAGGCAGAGGAAATGGTGCTTATTGGGAGTGGAGTTCTTGTTTCCCCTGTACTGCAGTGGGATGAGCAGATTATTGGTGATGGAAGAGAAGGTCCATTGGCTCGAGCACTTGTAGATCTTATTATCGAAGACATGAAATCCGGCCCTCTAACCGTTCGAATACCAGTTCTATATGAATAA 1155 43.64 MNALQSLLKPIPQSPISGAELTAHSQRPLGKSCNSRQWSFRRFRIRCSIADTVDRSSDAPVLGSSQVLERLRASRENQENQPQFLAMYSSVVGGITTDPAVMVIPIDDHMVHRGHGVFDTAAIVDGHLYELDQHLDRILRSASMAKINLPVSYDREKIKNILIRTASASKCRNGQLRYWLSAGPGNFLLSTSGLHQPALYAIVIQGKPPSPPKGIKVITSSIPMKPPQFATMKSVNYLPNVLSNMEAEEKGAYTAIWLDSEGFIAEGPSMNVGFITKDKEFLMPHFDKILSGCTAKRIITLAERLVKEGRLRSIRFENLTMEEGKKAEEMVLIGSGVLVSPVLQWDEQIIGDGREGPLARALVDLIIEDMKSGPLTVRIPVLYE 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10061966 10064296 + CmaCh01G014300.1 Cma01g01430 287123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01430 384 Pfam Amino-transferase class IV 116 344 IPR001544 GO:0003824
Cma01g01430 384 Gene3D - 210 374 IPR043132 -
Cma01g01430 384 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 93 370 IPR036038 GO:0003824
Cma01g01430 384 PANTHER AMINO-ACID AMINOTRANSFERASE 56 382 - -
Cma01g01430 384 Gene3D - 56 204 IPR043131 -
Cma01g01430 384 PANTHER BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE-LIKE 56 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01430 K18482 ADCL; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] - csv:101216383 575.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01156 Cma-Chr5:8981697 Cma01g01430 Cma-Chr1:10061966 2.05E-19 transposed
Cma01g01430 Cma-Chr1:10061966 Cma09g00841 Cma-Chr9:4127785 3.27E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g321 Blo01g01769 . . . . Bpe02g00175 . Bma01g02551 . . Cma01g01430 . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0608 . Csa03g04561 . . . . . . . . . . Sed12g1405 Cmo01g01479 . . . . . . Cpe02g00518 Bhi09g02599 Tan01g3948 Cmetu04g1371 . Hepe01g2230 Mch11g0780 . . . . . . . . . . . Cme04g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012240 1 2 1 1 1 0 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 2 4 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01430 Cma_Chr01 FPKM 46.075981 52.4981 16.002964 16.541531 10.472631 8.584676 8.868856 21.667562 23.952137 25.532293