Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01431 ATGGATGCAGCTAATATAAGTAATGTATATGTGGACGGGAATAAGGATGACAGTTTCTTTTGGAACTTCACGATTTATCGCTTTTCGAGTGATCGTTTTGGGGTATTCGTTGCGATGGTGAATCCCATGGTCGAACGCGCCACTAGCAATAAGCTGATTGGCCCAGACTGGGCCGTGAACATGGAGATTTGTGATATGATCGAGAGAGATCCTGGGAAAGCAAAAGATGTTTTTAAAGGAATAAATAAGCGCCTTGGAAGTAAGAACCCCAAAGTTCAGCTTCTTGTCCTAGTACTCTTGGAGACCATCATCAAGAATTGTGGGCACATTGGTCAAGCGTATGTGGCGGAGAAGGGAATTCCTCGTGAGATGGTAAAGATTGTAAAGAAGAAGCCTGACTTTCGTGTCAAAGAGAAGATATTGCTCCTGATAGATAGCTGGCAAGAGGCCACAGGAGGACCAACCGGACAATATGCACAATATTATGCTGCTTATCAAGAACTATTGCGTGCTGGGGCAGTTTTCCCCCAGAAATCAGAGATGTCATCGCCTGTACTCACACCTCCACAAAGACAAGCGGGATCGTATGGTCAGAATCTGCACAATCCTGATTATCAGCCAGATGCTCCAGGATCCTCTTTACATGTTAAATCTTCAACCTTAAGCTTGACCGAGATCCAACTTGCAAGGGGAGTGGTGGATGTGCTTGCTGAGATTCTAAGTACATTAAAACCAGGAAACAAGGAGGGCATTAAGCAGGATGTCGTCGTTGACTTGGTAGAACAATGCCTTAATTACAAGCACAGGGTCACTAATCTTGTGAATTCAACGTCGGATGAATCATTGCTCTGCCAAGGATTGTCACTTAATGACGATTTACGACGTGTACTTTCCAGGCATGAAGCCATTGCTTCAGAAACTTCTGTTCAGAAAGAGAAACCCAAGCCTCAATTGGTTGAAGCACGTCGTGATGCTCGTTTGCCTCTTCGTAACACCGGTGATAAAAACAACCCACAACCTGAGAGCTCGATCTCGAATACTACTGTCTCAGGCACACAAACGGTAAATGAGTCGGTCCATGCACTTCCTGCTACTGATGGTCCAGCTTCTCCAGCTAAGTTTGATCCCAAATTAGACCTACTGAGTGGTGATGACTACATTTCTCCAGGGGCAAACACTTCACTGGCTCTTGTTCCTTTGACCAAGCAGCAGCCAACTACTTTATCTGAGCAGACCACTCTCGTCCTCTTTGACCAAAGCGATGCTTCGGTCTCAAACTTCCATCAGCACCAGAATTTTCAGTCCCCGCAGGGTGGACTGCACCACCTCAATGGAACTGTCCAAAGCCCCGGATCGTCTCACTGGAAGCAGTCACTATACACAAATGCTTCTGGTCCTGGTCCCTACATGAATAGACAGCAACAACCCCTGCCACTTGCTCCATATAATGGTTCTCTAAACAACCAGTCATTTCCGCCGCCACCATGGGAGGCTCAGCCTGGGGATGATAATGGTTCGATAGCTGGTGAGCATCCATATTCAATGAAGGTAACTCAAGTTGTTTTCACGCATGTGCAGAATGGTCTGTATCCACAGGGACCTCCGCCAATGGGAAACGACCAATTTGTAGGTGTGTACGTCCAGCCAATTGTAGGCAGCCAGATTTCAGCACATAATGGCCAGCTCGACTTGGCCCCTCACACCTTCCATGGAGGGCCTTATGGTGGAACCATGCTACCACAGCAGACAGGACAGATGACAGCTCTGTATCCTTTGCAAATGCTTGGCAACCAATTTCATGGCTACGGCCTCATCCAGCCACAGCCACAGCCACAGCCACAGGGGACACAGCATCTGACGCAGCGGGTGTATGGGCTATCCATTAAAGATGATAATGGCATGAGAAATTCGTCCTACCAGGTTTCTACCTCCTCTAGTGTGCCTCCCATTAAGCATTCTAAGCCTGAGGATAATCTGTTTGGTGATCTTGTTGACATGTCAAAGTTTAAGCCCAGGAAACCCACCCTTGCGGCTGCTGGAAGCAGGGTCGTGACGTCCACTGTATATTTTGGACCACTGGGCTTTCTTTGA 2091 47.39 MDAANISNVYVDGNKDDSFFWNFTIYRFSSDRFGVFVAMVNPMVERATSNKLIGPDWAVNMEICDMIERDPGKAKDVFKGINKRLGSKNPKVQLLVLVLLETIIKNCGHIGQAYVAEKGIPREMVKIVKKKPDFRVKEKILLLIDSWQEATGGPTGQYAQYYAAYQELLRAGAVFPQKSEMSSPVLTPPQRQAGSYGQNLHNPDYQPDAPGSSLHVKSSTLSLTEIQLARGVVDVLAEILSTLKPGNKEGIKQDVVVDLVEQCLNYKHRVTNLVNSTSDESLLCQGLSLNDDLRRVLSRHEAIASETSVQKEKPKPQLVEARRDARLPLRNTGDKNNPQPESSISNTTVSGTQTVNESVHALPATDGPASPAKFDPKLDLLSGDDYISPGANTSLALVPLTKQQPTTLSEQTTLVLFDQSDASVSNFHQHQNFQSPQGGLHHLNGTVQSPGSSHWKQSLYTNASGPGPYMNRQQQPLPLAPYNGSLNNQSFPPPPWEAQPGDDNGSIAGEHPYSMKVTQVVFTHVQNGLYPQGPPPMGNDQFVGVYVQPIVGSQISAHNGQLDLAPHTFHGGPYGGTMLPQQTGQMTALYPLQMLGNQFHGYGLIQPQPQPQPQGTQHLTQRVYGLSIKDDNGMRNSSYQVSTSSSVPPIKHSKPEDNLFGDLVDMSKFKPRKPTLAAAGSRVVTSTVYFGPLGFL 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10064395 10071348 + CmaCh01G014310.1 Cma01g01431 287124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01431 696 Pfam VHS domain 40 169 IPR002014 GO:0035091|GO:0043130
Cma01g01431 696 SMART VHS_2 40 172 IPR002014 GO:0035091|GO:0043130
Cma01g01431 696 ProSiteProfiles VHS domain profile. 47 176 IPR002014 GO:0035091|GO:0043130
Cma01g01431 696 MobiDBLite consensus disorder prediction 305 353 - -
Cma01g01431 696 CDD GAT_GGA_like_plant 225 303 - -
Cma01g01431 696 SUPERFAMILY ENTH/VHS domain 41 176 IPR008942 -
Cma01g01431 696 Gene3D - 217 313 IPR038425 -
Cma01g01431 696 MobiDBLite consensus disorder prediction 305 330 - -
Cma01g01431 696 CDD VHS 40 154 - -
Cma01g01431 696 MobiDBLite consensus disorder prediction 443 492 - -
Cma01g01431 696 MobiDBLite consensus disorder prediction 180 214 - -
Cma01g01431 696 SUPERFAMILY GAT-like domain 183 305 - -
Cma01g01431 696 Gene3D - 38 176 IPR008942 -
Cma01g01431 696 PANTHER TARGET OF MYB PROTEIN 1 39 674 - -
Cma01g01431 696 MobiDBLite consensus disorder prediction 332 353 - -
Cma01g01431 696 MobiDBLite consensus disorder prediction 443 508 - -
Cma01g01431 696 Pfam GAT domain 231 304 IPR004152 GO:0035091|GO:0043130
Cma01g01431 696 ProSiteProfiles GAT domain profile. 217 305 IPR004152 GO:0035091|GO:0043130
Cma01g01431 696 PANTHER TOM1-LIKE PROTEIN 39 674 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01431 - - - cmo:103503594 817.764
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01431 Cma12g00261 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01431 Cma-Chr1:10064395 Cma12g00261 Cma-Chr12:1332575 0 dispersed
Cma01g01431 Cma-Chr1:10064395 Cma05g00599 Cma-Chr5:2991315 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014022 0 2 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01431 Cma_Chr01 FPKM 60.11095 60.831528 4.138022 4.334213 0.695836 0.619025 0.595383 20.147074 19.907646 19.921263