Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01432 ATGTCCGCCGATTTTGCTCCGCCTTACAAGTTTTCGATTCTGGAGCTGGGACGGGTTCCCATATTTAGAACATTATATATGGTGTACAACAAGAGCAAATTCCTCGACAATGCGAGATGGAAGCCAAATGCCCAGAAGCAGCTGATGGAAGCCGGCATGATAAAGTATTCGATATTATATTTATATCCAGCCAAGACGGTCGTCGGCGGCGTTGGGCGAGTGCCTGTTGACCGTGAAATTGTGTGCAACCATATTGTATCCATAAGAAATGGGAACCATTCGCCGATATTGCAGCAAATCTGCGTCGGATATTTGGACTCACGGGACGACGATGAGGGCGTGGACCGGATTGGATCGCGTCCACTGCAATGCCCAGCTATAATTATTGTAATAATGCCACGAGACGCTGTCGAAATCGAAAATAATCAAATGGAAGAAGCTCTTGTTGACGCCGACAAGTTTCGGGCCGAATTCCTTCGAGTTTTGCGTCATCGACGATCTGGAGAAGTTCCGCCGAATGTGAAGCTTTCAAAGCCTATCCAGGATCCTCTGATTCAGGAGGCCAACCCACCAGCCTTGAGTAAGGCAATGGAATCTTGTCCAAAGGAAGATATTAGCAATTTGAAGGACTTGCTTCATGAGGAAAATCTTCATCTGGCTACAGAGGAAGGGGAGCAAGGGCAGTTGCCTATATTGATTATAAGCATGAAGGATAGCAAACAGCAAAAGAAACCTGCAATTGTTTTTCTGCACAGTACGAACAAGTGCAAAGAGTGGTTGAGACCATTGCTTGAGGCTTATGCATCGAGGGGATACGCAGCCATTGCCATTGATTCTCGTTACCATGGTGAAAGGGCCAAGAACAAAACCACCTACCGCGATGCTCTTGTATCTTCATGGAAAAGAGGTGATACCATGCCGTTCATATTTGACACGGTATGGGACTTGATCAAATTGGCAGATTACCTGACGAAAAGGGAGGACATTGACCCATGTAGAATCGGAATTACCGGCGAATCTCTTGGAGGAATGCATGCATGGTTTGCTGCTGCTGCCGACACACGCTATGCCGTGGTTGTCCCCATAATTGGCGTGCAGTGTTTTCGATGGGCCATAGATAATGATAAGTGGCAGGCCCGAGTTGAGAGTATAAAACCTGTTTTCGAGGAAACAAGAATGGAATTAGGCATGAATGAGATCAACAAAGAAGTGGTGACCAAGGTCTGGAATAGGATTGCTCCTGGTTTAGATTCCAAATTTGACTCGATTTATTCAGTTCCAGCTGTTGCACCACGTCCTTTGTTGTTGTTAAATGGTGCAGATGACCCTCGATGTCCAATTGCCGGTTTGGATGCAACTGTATCAAGAACACAGACAGTTTATCAGAACTTTGGTTGTCCAGAAAATTTTAAGTTCATCGCACAACCTGGGATTGGCCACGCAATGACACCAGAGATGGTGAAAGAAGCTAGCGATTGGTTTGACAGGTTTTTAGGGCAGAGTTTAGAGTAG 1512 45.9 MSADFAPPYKFSILELGRVPIFRTLYMVYNKSKFLDNARWKPNAQKQLMEAGMIKYSILYLYPAKTVVGGVGRVPVDREIVCNHIVSIRNGNHSPILQQICVGYLDSRDDDEGVDRIGSRPLQCPAIIIVIMPRDAVEIENNQMEEALVDADKFRAEFLRVLRHRRSGEVPPNVKLSKPIQDPLIQEANPPALSKAMESCPKEDISNLKDLLHEENLHLATEEGEQGQLPILIISMKDSKQQKKPAIVFLHSTNKCKEWLRPLLEAYASRGYAAIAIDSRYHGERAKNKTTYRDALVSSWKRGDTMPFIFDTVWDLIKLADYLTKREDIDPCRIGITGESLGGMHAWFAAAADTRYAVVVPIIGVQCFRWAIDNDKWQARVESIKPVFEETRMELGMNEINKEVVTKVWNRIAPGLDSKFDSIYSVPAVAPRPLLLLNGADDPRCPIAGLDATVSRTQTVYQNFGCPENFKFIAQPGIGHAMTPEMVKEASDWFDRFLGQSLE 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10072185 10079315 - CmaCh01G014320.1 Cma01g01432 287125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01432 503 Gene3D alpha/beta hydrolase 149 502 IPR029058 -
Cma01g01432 503 SUPERFAMILY alpha/beta-Hydrolases 241 499 IPR029058 -
Cma01g01432 503 PANTHER ESTERASE YITV-RELATED 145 498 - -
Cma01g01432 503 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 145 498 - -
Cma01g01432 503 Coils Coil 137 157 - -
Cma01g01432 503 Pfam Prolyl oligopeptidase family 269 496 IPR001375 GO:0006508|GO:0008236
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01432 - - - cpep:111788064 727.243
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01432 Cma09g00643 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01432 Cma-Chr1:10072185 Cma09g00643 Cma-Chr9:3034442 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g316 . Blo12g00759 . Bda03g00427 . . Bma04g00402 . . . Cma01g01432 . Car09g00568 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02338 Csa03g04559 Chy04g00143 . . . . . . Bpe04g00393 . . Sed04g0534 Cmo01g01481 Cmo09g00625 Cma09g00643 . . . . Cpe02g00516 Bhi09g02595 Tan01g3944 Cmetu04g1421 . Hepe01g2228 Mch11g0778 . . . . . . . . . . . Cme04g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006905 2 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01432 Cma_Chr01 FPKM 25.046633 27.584341 12.833452 11.636249 21.524717 24.307217 19.859589 17.038498 18.036318 18.268841