Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01437 ATGTCCCAAACAGAGGAGCCTCCAACCCAATCCATCAGCCCCACCAGCAGCAAGCGCGTTCGAGATTCCAGCAAGCACCCACTCTACCGTGGCGTCCGAATGCGAGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCCCGTAAGAAATCCCGCATTTGGCTCGGCACCTTCCCCACACCCGAGATGGCCGCTAGAGCCCACGACGTCGCTGCTTTATCCATCAAAGGCAACAATTCCGCTATTCTCAACTTCCCTGAACTCGCCCACTCCCTCCCCCGCCCTGCCTCCTTCGCCCCTCGCGACATCCAAGCCGCTGCCGCTAAAGCCGCGCACATGGACCCTTCCCAATACTCTGCTTCCGCCGCCGACGACGATTCCGACGACCTCGCAGAGATCATCAAACTCCCCAATCTGGGCACCAACTACGACCACTCCATCGGCAATAACGAATTTGTCCTCATGGATTCAAGCGAGAGCTGCTGGGCTTATCCGCCGCCCTGGGTTCGAACCATGGAGGATACAGCGGAGGATGATTTATGA 543 58.56 MSQTEEPPTQSISPTSSKRVRDSSKHPLYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNNSAILNFPELAHSLPRPASFAPRDIQAAAAKAAHMDPSQYSASAADDDSDDLAEIIKLPNLGTNYDHSIGNNEFVLMDSSESCWAYPPPWVRTMEDTAEDDL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10106811 10107515 + CmaCh01G014370.1 Cma01g01437 287130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01437 180 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Cma01g01437 180 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Cma01g01437 180 CDD AP2 27 88 IPR001471 GO:0003700|GO:0006355
Cma01g01437 180 MobiDBLite consensus disorder prediction 1 27 - -
Cma01g01437 180 SMART rav1_2 28 92 IPR001471 GO:0003700|GO:0006355
Cma01g01437 180 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Cma01g01437 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 173 - -
Cma01g01437 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 173 - -
Cma01g01437 180 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Cma01g01437 180 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Cma01g01437 180 ProSiteProfiles AP2/ERF domain profile. 28 86 IPR001471 GO:0003700|GO:0006355
Cma01g01437 180 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01437 Cma-Chr1:10106811 Cma12g00253 Cma-Chr12:1285060 5.61E-63 dispersed
Cma01g01437 Cma-Chr1:10106811 Cma09g00635 Cma-Chr9:3002095 2.05E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34337 PF00847 AP2 3.70E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01437 K09286 - csv:101217333 226.098