Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01438 ATGTTGGGTTCATCTAATTCTTCCAGAAAGAAGCAACAAGTGAAGCCAGAAAAAGAATGGCTCTCGGTGAGTTTCAGACCCGAGAATTTCATACCAGGCCTCGTTATTGGTTTCATTGCTGGGTTCTTGTTGGATTTGTCAAAACCTAGTAAAGGTAATGCTAAGAAGGGTTATTTTTTGCCCTCCAAGTACCAACAGATATCTCCAGCTTCAAACAACGGTGATCAAGAGCTCAAATTGGTACTGGTTGTGAGGCAAGATCTGAAGATGGGTTCTGGAAAAATTGCATCTCAATGTGCTCATGCTGCTACTGGCTTGTATGCACAACTAATGCAAAGCCACCGAAACCTTTTGAGACAATGGGAGCTATGTGGGCAACCAAAAATAGTTGTAACATGCAAGAATCAACAAGAAATGAATAAACTGAAGGATGCAGCTGAGAACGTTGGCCTTCCTACTTTTGTTGTTGCCGATGCTGGACGCACACAGGTTTCAGCTGGATCAAAGACTGTTCTTGCCATTGGACCTGGTAATGCTTCTTTACCCTATGATGATAGAATTCTAAGGTTGGTTCCGCGGTTGGGTTCCCTTGAATCTCTGCTTCCTCTTCATTCAGCAGTCTCTTCGGCGCGGCTAACATCGTGTCTTGGAATCGATTCGGTGTCTTCGAGATCATTGTCTCAGGTATCAGGAGGAGTTATGCTCCTTCAAAGTTCTTCTAATGTTGAAAATACAGAAGTCGAGGAGGTGGTGGTGGTGGTGGTGGTGGGCGGCGGCGGCGGCGGCGGGAATGGCGGCCGTTTTAATGGTGTCGGAGGAGGAATGGGAGCAAATTCTCTAATTAGGCCCATTGTCTTAATCCATGGCCGGCCCAACGTCTTTCTTGATGCTCTCGCTTCGACGATGGATTATCACCTTGCATTTCGAAATGCCTTCAAATATAACATTATTTCGGCTTCTTCTTGTTCCAGCGACTTCTGTGTAGACATTGTGACCTTGATTGCCGCCTCCATGAGTAAGCCACTGGGTCGTGAGATTCCTGTTAAGTTCTATAAATAG 1059 45.61 MLGSSNSSRKKQQVKPEKEWLSVSFRPENFIPGLVIGFIAGFLLDLSKPSKGNAKKGYFLPSKYQQISPASNNGDQELKLVLVVRQDLKMGSGKIASQCAHAATGLYAQLMQSHRNLLRQWELCGQPKIVVTCKNQQEMNKLKDAAENVGLPTFVVADAGRTQVSAGSKTVLAIGPGNASLPYDDRILRLVPRLGSLESLLPLHSAVSSARLTSCLGIDSVSSRSLSQVSGGVMLLQSSSNVENTEVEEVVVVVVVGGGGGGGNGGRFNGVGGGMGANSLIRPIVLIHGRPNVFLDALASTMDYHLAFRNAFKYNIISASSCSSDFCVDIVTLIAASMSKPLGREIPVKFYK 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10110306 10118039 + CmaCh01G014380.1 Cma01g01438 287131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01438 352 CDD PTH2 79 181 IPR002833 GO:0004045
Cma01g01438 352 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 5 180 - -
Cma01g01438 352 SUPERFAMILY Peptidyl-tRNA hydrolase II 77 180 IPR023476 -
Cma01g01438 352 PANTHER PEPTIDYL-TRNA HYDROLASE 2 5 180 IPR002833 GO:0004045
Cma01g01438 352 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 78 178 IPR002833 GO:0004045
Cma01g01438 352 Gene3D Bit1 73 183 IPR023476 -
Cma01g01438 352 Pfam Peptidyl-tRNA hydrolase PTH2 78 180 IPR002833 GO:0004045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01438 K04794 PTH2, PTRH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] - csv:101217564 337.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01438 Cma-Chr1:10110306 Cma02g00464 Cma-Chr2:2428703 3.38E-29 dispersed
Cma16g01131 Cma-Chr16:8708936 Cma01g01438 Cma-Chr1:10110306 7.38E-06 dispersed
Cma01g01438 Cma-Chr1:10110306 Cma20g00926 Cma-Chr20:4531557 2.31E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g281 . Blo12g00753 . Bda03g00431 . . Bma04g00409 . . . Cma01g01438 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02330 Csa03g04549 Chy04g00153 . . . . . . Bpe04g00399 . . . Cmo01g01488 . . . . . . Cpe02g00510 Bhi09g02577 . . . . . . . . . . . . . . . . Cme04g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011134 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01438 Cma_Chr01 FPKM 4.988439 4.94542 8.150674 6.180766 12.99847 12.986463 13.334662 9.298852 7.879937 10.396201