Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01439 ATGTTGTCTGTTTGGACCTTCCTTGTGCTTACTAAGATTTCCCTCCGAGAAGGATCGACAACCTATATGATAGAATTTTCCCCTTACCCAATCTCTTCTCATTCGCACCTCTCAATCTTCCCTTCTCTTTCGCTCTTTCCTTTTAATCTCTCCATACCATTTTCATTTTACAGTGTTCTACTCACAATCCTGTCGTCCGGTTCTGGATTTTCGCTTTCTAATTCTCTGTTGCTGAAGCCGCCATTTGGGTTTTTGTTTTTTTGGATGATTATGGCGGAGGTGTCGTCTTTGCTTTCTGTGGGGATGATGGCAGTGACCTCCAGCTGCAAGGATGCTGCTAGCATGGATAATGGCAAATATGTTAGGTACACACCTGAGCAAGTCGAAGCTCTTGAGAGGCTTTATTATGATTGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAATATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGGGAGAAACAGAGGAAGGAATCATCACGCCTGCAGACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGCTGCAGAAACAGGTGTCACAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACGAGTTGTGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACCCCGCCGCATCCACCAAAGGATGCAAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGCTGCACTGGAGTTGCAGCTCGTGCGTGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTATCGCGACTGCCGTGCTGTTGACGTTCTAAATGCCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTTTATATGCAGCTCTATGCGCCTACTACTCTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTAAGAGCAGAAATGCTACCTAGTGGATATTTGATAAGACCTTGTGAAGGCGGTGGATCAATAATTCATATAGTTGATCACATGGATTTAGATCCTTGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAATCATCTACGCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGGTACTGGTTGGGGAAGACGACCTACTGCTCTTCGTGCTCTTAGTCAGAGATTGAGCAGAGGTTTCAACGAAGCAGTAAACGGGTTTACAGATGAGGGATGGTCTTTGTTAGAAAATGACGGCATTGATGATGTTACACTTCTTGTAAACATGTCTAATGCCAAGACAATGATGGGTGCAAATATTTCATATTCTAATGGCTTTCCATCTATGAGCAACGCAGTGCTTTGTGCCAAAGCATCGATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACACCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGGTCACTCTTCCCTTGGCACAAACGGTTGAGCATGAAGAGTTTATGGAAGTTCTTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGTCTGGTGACATCTTCCTCCTCCAACTTTGCAATGGCGTGGAAGAGAATGCAGTAGGAACTTCTGCTGAGCTCATCTTTGCTCCGATTGATGCCTCTTTTTCTGATGATGCACCCATTTTAGCATCTGGCTTCCGCATCATCCCTCTTGATTCTGGAATGGATGCTTCAAGTCCAAACCGCACCCTTGATCTTGCTTCAGCTCTTGATGTCGGACCGGCAGGGAATAGAGCTGCTGGTGATTATGCTTGTCAATCAGGAAAATCCAAATCTGTGATGACAATTGCATTTCAATTTGTATTTGATGTTCATCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCCGAAGCATTATAGCATCTGTTCAGAAAGTGGCACTGGCTCTTTCCCCTTCCAATGTCGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTACATGGGCATGGACTTACTGAAAAATGAAGGAAGAGAGCCCATTCTCAAATCCCTTTGGCATCACTTAGATGCAGTCATGTGCTGCTCTGTAAAGGCTTTGCCAAATTTTACATTTGCAAATCAATCTGGGCTTGACATGCTTGAGACAACCTTGGTGGCTCTGCAAGACATTACTCTAGAGAAGATTTTTGATGATAATGGAAAGAAAACTTTGGCCTCAGAGTTCCCACGGATAATGCAACAGGGGTTCCTTTGTCTTCAAGGGGGCGTCTGCTTATCAAGCATGGGAAGGGCAGTATCATATGAGAAAGCTGTGGCTTGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGTTTCATGTTTATGAACTGGTCTTTTGTTTGA 2820 45.21 MLSVWTFLVLTKISLREGSTTYMIEFSPYPISSHSHLSIFPSLSLFPFNLSIPFSFYSVLLTILSSGSGFSLSNSLLLKPPFGFLFFWMIMAEVSSLLSVGMMAVTSSCKDAASMDNGKYVRYTPEQVEALERLYYDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWYRDCRAVDVLNALSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLDPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNGTGWGRRPTALRALSQRLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSNAKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADTSIDAYSAAAIKTGQCGLPGSHAGTFGGQVTLPLAQTVEHEEFMEVLKFENVGHYRDDMLMSGDIFLLQLCNGVEENAVGTSAELIFAPIDASFSDDAPILASGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRAAGDYACQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQKVALALSPSNVGPHANLQTPAGAPEAQTLARWICQSYRCYMGMDLLKNEGREPILKSLWHHLDAVMCCSVKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10124986 10134118 + CmaCh01G014390.1 Cma01g01439 287132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01439 939 CDD homeodomain 119 179 IPR001356 GO:0003677
Cma01g01439 939 Gene3D - 111 185 - -
Cma01g01439 939 CDD START_ArGLABRA2_like 257 472 - -
Cma01g01439 939 ProSiteProfiles 'Homeobox' domain profile. 114 178 IPR001356 GO:0003677
Cma01g01439 939 ProSiteProfiles START domain profile. 253 467 IPR002913 GO:0008289
Cma01g01439 939 Pfam START domain 263 471 IPR002913 GO:0008289
Cma01g01439 939 SUPERFAMILY Homeodomain-like 119 180 IPR009057 -
Cma01g01439 939 SMART HOX_1 116 182 IPR001356 GO:0003677
Cma01g01439 939 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 107 939 IPR044830 GO:0003700
Cma01g01439 939 Coils Coil 188 215 - -
Cma01g01439 939 Gene3D - 297 473 IPR023393 -
Cma01g01439 939 CDD bZIP 171 210 - -
Cma01g01439 939 SUPERFAMILY Bet v1-like 262 472 - -
Cma01g01439 939 PANTHER CLASS III HD-ZIP PROTEIN CNA1 107 939 - -
Cma01g01439 939 SMART START_1 262 472 IPR002913 GO:0008289
Cma01g01439 939 Pfam MEKHLA domain 798 938 IPR013978 -
Cma01g01439 939 Pfam Homeodomain 119 177 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01439 Cma09g00556 CCT
Cma01g01439 Cma09g00556 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01439 Cma-Chr1:10124986 Cma17g00776 Cma-Chr17:6215474 0 dispersed
Cma01g01439 Cma-Chr1:10124986 Cma09g00631 Cma-Chr9:2977089 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34338 PF01852 START 3.80E-54 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01439 K09338 - csv:101218438 1623.6