Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01442 ATGATACGAACAGAAACGAGGATGGGTCGCTCCCTTCTCTCGCACTTTCTCGTCCTCTCACAGTCGTCTCCTCGCTTTACACCTTCTCTATCATTTTCTGCGTTTGGAAGCAATCGCTCCAAGGCTCATTCGCTCTTTCGGCTTCATCGGTCTTCAATTGGAAACAGTTCCCAATGCTGTTGCAGTATCTCCGTCACCGAACCTGCTGCGTCAGAGCGTCCTCCCAGTTCCATCAAGCAGAGGATAGTATCGGGTGTTCAGCCAACAGGCTCTATTCATCTTGGTAATTATCTAGGTGCAATAAAGAATTGGATTTCGCTCCAGGACACATATGATACTCTCTTCTTCATTGTGGATCTTCATGCGATCACCTTACCTTATGATACCCAACAACTAAGTAAAGCAACAAGAAATACAGCGGCTATTTACTTAGCATGTGGTATAGATACCTCCAAGGCTTCTGTCTTCGTTCAGTCTCATGTCCGTGCTCATGTAGAGCTGATGTGGCTTCTTAGTTCAGCTGCCCCAATTGGTTGGCTGAACAGGATGATTCAGTTTAAGGAGAAATCACGCAAGGCGGGGGATGACAATGTTGGCGTTGCACTTCTCACCTATCCAGTTCTAATGGCTTCTGATATTCTTCTATATCAGTCAGACCTTGTCCCTGTTGGCGAGGATCAAAAGCAGCATCTTGAGTTGACTCGTGAGCTGGCTGAGCGTGTTAATTATCTATATGGTGGAAGGAAGTGGAAGAAATTAGGAGGGAGAGGCGGGAACATTTTCAAGGTTCCTGAGCCACTTATACCACCAGCTGGTGCGCGGGTTATGTCCCTCACTGATGGTCTTTCTAAGATGTCCAAATCTGCTCCTTCTGACCAATCGAGAATCAATCTTCTCGACTCCAAAGATGTAATCGTGAGCAAGATAAAACGTTGCAAAACGGACTCATTTTCAGGGTTGGAATTTGATAATCCCGAAAGACCAGAATGCAACAATCTTCTTACAGTTTACCAACTTGTTTCTGGAAAAACAAAAGAGGAAGTTAAGCAGGAGTGTGAGAATATGAATTGGGGAACATTTAAAATCCTTTTAGCCGATGCTTTGGTCGAGCATCTCCATCCTATCCAGGTCCGCTACAATGAAATTGTATCTGATTCTGCTTATTTGGATGAAGTCCTGGCCGAAGGTGCTAGTAAAGCTTCAAGTATTGCAGATGTAACTCTCAATAATGTCTATCAAGCTATGGGATTCTTTCGGAGATGA 1263 44.58 MIRTETRMGRSLLSHFLVLSQSSPRFTPSLSFSAFGSNRSKAHSLFRLHRSSIGNSSQCCCSISVTEPAASERPPSSIKQRIVSGVQPTGSIHLGNYLGAIKNWISLQDTYDTLFFIVDLHAITLPYDTQQLSKATRNTAAIYLACGIDTSKASVFVQSHVRAHVELMWLLSSAAPIGWLNRMIQFKEKSRKAGDDNVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGNIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDSKDVIVSKIKRCKTDSFSGLEFDNPERPECNNLLTVYQLVSGKTKEEVKQECENMNWGTFKILLADALVEHLHPIQVRYNEIVSDSAYLDEVLAEGASKASSIADVTLNNVYQAMGFFRR 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10151083 10160613 + CmaCh01G014420.1 Cma01g01442 287135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01442 420 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 88 97 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma01g01442 420 SUPERFAMILY Nucleotidylyl transferase 81 417 - -
Cma01g01442 420 Pfam tRNA synthetases class I (W and Y) 81 372 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma01g01442 420 TIGRFAM trpS: tryptophan--tRNA ligase 79 417 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cma01g01442 420 PANTHER BNAA04G15180D PROTEIN 74 418 - -
Cma01g01442 420 Hamap Tryptophan--tRNA ligase [trpS]. 79 418 IPR024109 GO:0004830
Cma01g01442 420 Gene3D HUPs 82 416 IPR014729 -
Cma01g01442 420 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 74 418 - -
Cma01g01442 420 CDD TrpRS_core 81 371 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cma01g01442 420 Gene3D - 277 387 - -
Cma01g01442 420 PRINTS Tryptophanyl-tRNA synthetase signature 92 108 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cma01g01442 420 PRINTS Tryptophanyl-tRNA synthetase signature 142 161 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cma01g01442 420 PRINTS Tryptophanyl-tRNA synthetase signature 219 240 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Cma01g01442 420 PRINTS Tryptophanyl-tRNA synthetase signature 284 294 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01442 K01867 WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] - csv:101219148 731.865
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g9 . . . . . . . . . . Cma01g01442 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02321 Csa03g04541 Chy04g00162 . . . Bda01g00942 . . . . . . Cmo01g01496 . . . . . . Cpe02g00506 Bhi09g02566 Tan01g3920 . . . . . . . . . . . . . . . Cme04g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004388 1 5 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01442 Cma_Chr01 FPKM 2.982816 3.114379 3.33695 3.066506 22.661139 23.743956 21.49489 3.493918 3.325937 3.270933