Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01443 ATGGGCAGGTGTCCTGAGCTTCTTGATCTGATCTCTATGAACAGGGAATGGAAGTTGACTAGAAATGGTGCTGAAAGCTCTGTGAGTGAGAACAATAAAACAGAACTGAGACTCGGATTGGCAGGAGGAGAAGGAGAAGAAAGCAGCAGCAGCAGCTTGAATGGAAATGATGAATTCCAACCCCACAAGCTGATTGCTTCCTTACCATCTTCAGCTTTTCAAAGGGAAGCACACAAGCTGGAGTTGGTGCCATATTTGCAACATTTTTTGATGACCCAGAACCTGGAGTTGGTGTCAGAGGAGCCATCAAAGGCATGCAGTTTGAGAACAGCTGAGTTTCCTTACTTGAATGGGCAATCATGTCCGAACACTGGTTCTGTTCCTGCTGATTCATCTCAAGAACCTAAACACCATCACAAAAGGGCATCGGCTGCATCAGCTGTTGGTTGGCCCCCCATCCGTTCATCCAGGAAGATCTATGTTATCCCCCGCTCTTCAAAGCCTAACCCTCTTGAGTTGTCAAAAGCTGTGAAGGAGGGGAATGGCTCAAAATCCGACTGTTGCAGTGGACAAATGTTTGTTAAAGTCTGTATGGATGGCGTTCCCATTGGAAGGAAACTGAATCTCCAAGCCTATAATAGTTATGATCAACTCTCTGCTGGCATACACGAGCTCTTCCACTGTCTTCTTGCAGCACAAAAAGGTTATCTGGAGGCTGAGGAAGGGAGAAAGATGGAGGAAACAACAACATTTTCTGATTCCAAACAGATGAACGGGATGTATACTCTGGTTTACTATGATAATGAAGGGGACAGAATGCTTGTTGGTGATGTCCCATGGAACATGTTTGTTTCCACTGTGAAGAGGCTACATGTGTTAAAGAGCTCTGCCATTGCCACCGAAAAGAACGGTTCCTCAGCCTTCGAACTTTGTCGGCCAATTCGTCTAATCACCCTGGCTGTCCTTCACGACTACAACCACCGCAGAATCATCCACCTTCTTCTACGATGCGCCGCCCAGCTTTCAATGCGTCAGCTTTTCGAAATCCAAGCCCAACTCCTCGCCTCCCCCATCCCCTCCATCGACCCCAATATCGTAGCAGTCAAGTTCATCGGCGTTTCTTCCTCCCATGGCAACCTGCGCCATTCTGTTCTCGTCTTCAATCACTATCTTACTTCTCCGAACATCTTTGCCTACAATGCTCTTCTCAAAGCCTTCGCTCAACACAACGCTTGGCACAAGACTATTGCTTACTTCAATAACCAGTTGGTAATGCCTGATGCACCAAACCCAGATGAGTATACTTTCACTTCTGTGCTCAAGGCCTGCGCTGCCCTTGCCCAGGTCCTTGAAGGCCAAAAAGTTCATTGTTTTGTGACCAAATATGGCTGTGAATCCAATCTGTTTGTGAGGAATTCACTGGTGGATTTGTATTTTAAGGTGGGTTGCAATTGGATTGCCCAGAAGCTGTTTGATGAAATGTCTGTGAGAGATGTTGTTTCATGGAACACTTTGATTTCGGGGTATTGTTTTAGTGGAATGGTGGAGAAAGCCCGGATGGTTTTTGATGGGATGATGGAGAAAAACTTGGTGTCCTGGTCGACGATGATCAGTGGCTATGCAAGGATGGGCAATTTAGAAGAAGCACGCCATCTGTTTGAGAAAATGCCAATGAGGAATGTGGTTTCTTGGAACGCAATGATAGCTGGGTATGCACAGAATGAGAAGTATGCAGATGCAATTGAGTTGTTCAGGCAAATGCAGCGTGAAGGCGACCCGGCACCCAACGATGTAACGCTTGTTAGCGTACTCTCCGCTTGTGCACATCTTGGTGCTCTTGATCTGGGGAAGTGGATACACAAGTTTATAAGACGAAGCAAGATGGAAGTAGGGCTGTTTTTAGGGAATGCATTGGCAGACATGTATGCAAAATGTGGATGCATATTGGAGGCCAAGAGGGTGTTTCATGAAATGCAGGAGAGAGATGTGACTTCATGGAGTATAATAATTATGGGGTTGGCTATGTATGGCTATGCAGATGAAGCATTCAAGTGCTTTGATGAAATGATTGAAGATGATGGTTTAAAGCCAAATGATATTTCCTTCATGGGTTTATTAACATCCTGCACTCATGCTGGGTTGGTTGATAAGGGGCTGGAGTATTTTGACATGATGGCTGAAGTTTATGGTATTACTCCCAAGGTTGAGCACTATGGGTGTGTGGTCGATCTGCTTAGTCGTGCAGGGCGTCTTGATCAAGCCGAGTCTTTGATTAACTCTATGCCTATGCTGCCTAATGTAATTGTTTGGGGTGCACTACTTGGTGGTTGTCGGATATACAAAGATGCAAAACGAGGAGAATGCACGGTTCGACACATACTTGAACTAGACTCGAGTCATTCAGGAAGTCTTGTGTACCTGGCTAATATTTATGCTTCAATGGGTAGACTGGACGATGCAGCTAATTGTCGGTTGAAAATGCGAGACAACAAGTCAATGAAAACTCCTGGCTGCAGTTGGATTGAGATCGATAACTCGGTTTATGAATTTTTCATGGGGGACTTGTCGCACCCTCAATCTGCAAAAATATACTCAATGATTAAGGAATTGAAGTGGAAGATGAAACTTGCGGGATATAAACCAAAGACTGACCTTGTGATTCATAATATAGATGAAGAAGAGAAGGAGGATGCTCTTTCTACTCATAGCGAGAAGCTCGCCCTTGCATTTGGGCTTATCAATACCAGTGAGGGCACTACAATCAGAATAGTTAAGAACTTGAGAGTTTGCGACGACTGTCATGATGCAATGAAAATAATCTCGAAAATCGTTGAACGAGAGATTGTAGTGCGAGATCGAAGTCGTTTTCACCATTTCAAAAATGGTAAATGTTCTTGTAATGACTACTGA 2910 44.71 MGRCPELLDLISMNREWKLTRNGAESSVSENNKTELRLGLAGGEGEESSSSSLNGNDEFQPHKLIASLPSSAFQREAHKLELVPYLQHFLMTQNLELVSEEPSKACSLRTAEFPYLNGQSCPNTGSVPADSSQEPKHHHKRASAASAVGWPPIRSSRKIYVIPRSSKPNPLELSKAVKEGNGSKSDCCSGQMFVKVCMDGVPIGRKLNLQAYNSYDQLSAGIHELFHCLLAAQKGYLEAEEGRKMEETTTFSDSKQMNGMYTLVYYDNEGDRMLVGDVPWNMFVSTVKRLHVLKSSAIATEKNGSSAFELCRPIRLITLAVLHDYNHRRIIHLLLRCAAQLSMRQLFEIQAQLLASPIPSIDPNIVAVKFIGVSSSHGNLRHSVLVFNHYLTSPNIFAYNALLKAFAQHNAWHKTIAYFNNQLVMPDAPNPDEYTFTSVLKACAALAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNWIAQKLFDEMSVRDVVSWNTLISGYCFSGMVEKARMVFDGMMEKNLVSWSTMISGYARMGNLEEARHLFEKMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQREGDPAPNDVTLVSVLSACAHLGALDLGKWIHKFIRRSKMEVGLFLGNALADMYAKCGCILEAKRVFHEMQERDVTSWSIIIMGLAMYGYADEAFKCFDEMIEDDGLKPNDISFMGLLTSCTHAGLVDKGLEYFDMMAEVYGITPKVEHYGCVVDLLSRAGRLDQAESLINSMPMLPNVIVWGALLGGCRIYKDAKRGECTVRHILELDSSHSGSLVYLANIYASMGRLDDAANCRLKMRDNKSMKTPGCSWIEIDNSVYEFFMGDLSHPQSAKIYSMIKELKWKMKLAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCDDCHDAMKIISKIVEREIVVRDRSRFHHFKNGKCSCNDY 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10162705 10170138 + CmaCh01G014430.1 Cma01g01443 287136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01443 969 Pfam PPR repeat family 559 608 IPR002885 -
Cma01g01443 969 Gene3D Tetratricopeptide repeat domain 640 875 IPR011990 GO:0005515
Cma01g01443 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 528 IPR002885 -
Cma01g01443 969 Pfam DYW family of nucleic acid deaminases 878 969 IPR032867 GO:0008270
Cma01g01443 969 Pfam E motif 780 842 IPR046848 -
Cma01g01443 969 SUPERFAMILY CAD & PB1 domains 181 292 - -
Cma01g01443 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Cma01g01443 969 Gene3D Tetratricopeptide repeat domain 453 528 IPR011990 GO:0005515
Cma01g01443 969 Gene3D Tetratricopeptide repeat domain 529 615 IPR011990 GO:0005515
Cma01g01443 969 Gene3D Tetratricopeptide repeat domain 360 452 IPR011990 GO:0005515
Cma01g01443 969 SUPERFAMILY TPR-like 540 823 IPR011990 GO:0005515
Cma01g01443 969 Pfam AUX/IAA family 33 298 IPR033389 -
Cma01g01443 969 Pfam PPR repeat 636 662 IPR002885 -
Cma01g01443 969 Pfam PPR repeat 737 762 IPR002885 -
Cma01g01443 969 Pfam PPR repeat 500 529 IPR002885 -
Cma01g01443 969 Pfam PPR repeat 701 726 IPR002885 -
Cma01g01443 969 Pfam PPR repeat 472 497 IPR002885 -
Cma01g01443 969 Pfam PPR repeat 665 692 IPR002885 -
Cma01g01443 969 ProSiteProfiles PB1 domain profile. 191 295 IPR000270 GO:0005515
Cma01g01443 969 Gene3D - 186 306 - -
Cma01g01443 969 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 343 930 - -
Cma01g01443 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 697 IPR002885 -
Cma01g01443 969 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 343 930 - -
Cma01g01443 969 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 594 IPR002885 -
Cma01g01443 969 TIGRFAM PPR: pentatricopeptide repeat domain 531 561 IPR002885 -
Cma01g01443 969 TIGRFAM PPR: pentatricopeptide repeat domain 562 591 IPR002885 -
Cma01g01443 969 TIGRFAM PPR: pentatricopeptide repeat domain 500 531 IPR002885 -
Cma01g01443 969 TIGRFAM PPR: pentatricopeptide repeat domain 665 698 IPR002885 -
Cma01g01443 969 TIGRFAM PPR: pentatricopeptide repeat domain 636 663 IPR002885 -
Cma01g01443 969 MobiDBLite consensus disorder prediction 124 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01443 - - - csv:101222145 1217.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01443 Cma-Chr1:10162705 Cma11g01236 Cma-Chr11:8126362 0 dispersed
Cma10g00214 Cma-Chr10:959295 Cma01g01443 Cma-Chr1:10162705 1.83E-19 dispersed
Cma14g01289 Cma-Chr14:10188113 Cma01g01443 Cma-Chr1:10162705 8.49E-45 dispersed
Cma08g00961 Cma-Chr8:6020668 Cma01g01443 Cma-Chr1:10162705 1.86E-177 transposed
Cma10g00008 Cma-Chr10:25625 Cma01g01443 Cma-Chr1:10162705 4.37E-06 transposed
Cma19g00081 Cma-Chr19:477210 Cma01g01443 Cma-Chr1:10162705 7.63E-123 transposed
Cma01g01443 Cma-Chr1:10162705 Cma09g00626 Cma-Chr9:2935584 1.84E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g11 . . . . . . Bma04g00134 . . . Cma01g01443 . Car09g00554 . . . Cpe06g00483 . . . . . . . . . . . . . . . . . . . Csa03g04540 Chy04g00163 . . . . . . . . . Sed12g1387 . . . . . . . Cpe02g00505 Bhi09g02562 Tan01g3912 Cmetu04g3043 . Hepe01g2211 Mch11g0759 . . . . . . . . . . . Cme04g00187
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014431 1 1 0 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 0 0 1 1 1 1 0 0 0 1 1 1 17
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34339 PF02309 AUX_IAA 2.30E-54 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01443 Cma_Chr01 FPKM 2.976131 3.428896 5.041551 4.983168 4.526385 5.624162 5.498469 1.863864 1.751103 1.691123