Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01445 ATGTTTTCAATCTCTGCAATTAATGATACAGACTCCAGAAATCAGTGGGAACCCCTAGCTCCCACTAAAGAAGCTCAGGAATTCCATCTGACACAAACTTACCACGATGGGCTTCTTAAGTTAGAAGCAAAAGAGTATGAAAAGGCTCGTGAATTGTTGGAATCCGTTCTCAAGGATCATTTGATAGCATCTGCACAGGTTGATGGTGAAGCTGGTGATAATCATCTACTGCAGCTCAGATTCTTAGCACTTAAGAATCTTGCTGCTGTATTTCTACAACAGGGATCTGCACATTATGAGGGTGCTCTGCATTGTTATCTTCAAGCTGTGGAAATTGATTCTAAAGATTCTGTTGTATGGAACCAGCTGGGTACTTTATCTTGCTCAATGGGCTTACTTAGTATTTCACGTTGGGCATTTGAGCAAGGACTTGCATGCAGCCCTAATAATTGGAATTGCATGGAGAAGTTATTGGAAGTTCTAATTGCCATACGTGATGAGGTAGCCTGTCTTTCTGTAGCAGAATTGATTTTGAGGCACTGGCCATCACATGCTCGTGCTTTGCATGTGAAACGTACAATTGAAGAGCCGGAACCTGTTCCATATGCACCAAAAGGTATTGATAAGCTAGAACCAAAACATGTCCGCCTCAAATTTACTGATAAGAGGAAGGCTAGTGAAGAGGATCTTGATGAAGATGTCAAAGTTAAAAGGTCAAACCGGAATATAGACCTCCATCTAGCAGAAGCTTCCTGGGTAGGTCTTGTTGATGGACTCCTAGATATCTTACGTCCATTGAGCGGATGCGGATCTGAGGTGGAGGTTGAAAAACCACTTAGATCTGGTGATGTTGGATTAAAAATTTGCCTACCACCCAGTTTAGATTGTAGTACTGCATTTATGGAGAGGAAAGAGCTTGCTTCTACCTCCATTAGTGGAAATACATCTCTTGCGGATTCTAACACAGAAAATTCATCTTCTTTTAAAGAAAAAGAGGCAAGTGGTTTAGATGAACATCCACAGGAGAGACGTAGTACGCGTCTTGAAAGGCTAAGAAGTCGTAAGCCTGGAATAGAAGAATTAGATTATTCTACTAGTAAAGATCTGGCCAGGGTTGTAACTCAGTATCTTGAACCCTTTATTTCCTGTGCATTGGGAACCAAAGATACTGAACATGATACCAGGAAGTTTGTTTCCTATCCTGATCAGGAGAGTAAATGGGATTTGGACTGCTATGATGTTCATACTTTTTTGGTAGAGAATTCCTGTAATTATGGTGCTTACCATGTGAGTCATATGCTTTTAGAAAAGCTTTCAAGAACGTATCCTTCATTTCAGGATGCATTTTTCAAATTTCTGGACTTGGAAAAGTTGACAAGACATTGGGGAAAGGACAGATCTCTTGAATGCAATCTTTTTCTTGCTGAACTCTATTTTGACTTTGGGTCATTCTCATCTGATACTTCTAAGCAATCTGAATTCATGTCAGAGGCTTCATATCATCTATGTAAGATCATTGAGTTAGTAGCCCTGGAATATCCCTTGAATTTGAGTTCTGTCCGAAAGAGGGATAATGGCTCTAGCAGTCTTCAAGGTGACAGCAGAATATCATCTGAAAATTCTAGTAACCAGCATTTATTTGTTGAAAATTCACTTTTCACAAATAACAGATCCTTCTGGGTACGATTCTTTTGGCTTAGTGGGCAATTATCTTTGTGGGATGGAAACAAGGCAAAAGCCTGTGAAGAGTTCTGTATTTCTTTATCACTTCTGGAAAATAAGAATGATGTGCATGATTCTGTGTCACTGGTCTGCCTCCCTCACTGTCGGGTCTTGAAAAGGTTGACCTTGGATAGACTACTTTATGAAATCAACGTTTTAAAGGTTGACCTCTTGATGGAGAATGCTGTACCTGAAATGTTTGAGAAAGAAATGTTTGAAGAATGCATCACTTTACTTTCTCCACTTCTATTTGGTGTAGATGAACTTGACATTGATGCTTTATCCTTGCATTTTTCGGGAAGGAAAGATGCAGGGGTTACTTCGGTAGAACTTGCAGCGATTGATGTTTTAATCAAATCGTGTGAGAAGGAAAATCGTTTGGATATGGAGATATATTTGAATTCTCACCAACGGAAGCTGCAAATACTTGTGGCTGCTGCTGGAATGCATGAGTATTTTACATCAAGTAAATCCTTTCGTGAGAAGTCAGAGGCAAAAGCACTCTCTGACATAGAAACAAAGGATAGTGCGAGCAGCCACTGCAACCATCTAGTTGCAGAAGAAGTAAAAGCAATATCTCATTGTATATCACAAGTAAAGAACTCAATCGAACATTCCGGAGACTCAAATGACATACAGACAAGGAGGATTTCTGATATGCAGTTCTTGCTTTTATCAGTCATGTGTAACGTTATAAACATATTCCTCTCTAAGAAGTCTTCTGGGGTAGCAGTTGATGATCAAGTTGAAAAATGCTGCCTTGTAGATGCAGCCATTGCGTTCTGCAAACTCCAACATCTTGATCTTTCCGTGCCTGTGAAATCTCACGTTGAGTTAATTGTTGCAACACATGACCTACTTGCAGAATATGGTCTCTGCTGTTGGGGTGAGGGTGAAGGAGAGGAAGGAAAGTTTCTTAAATTTTCCATAAAGCATCTCTTAGCTTTGGATATGAAACTTAAATTGAACAGCTCGGTAAATGGGAAAAGAATTGAATGTGATGACATGGAATGGCAGAATTGTCAGGTAAAAGCATCTCCAGACCGACCAAAATTAAATGCTCAAGATTTGGGGTTAAGTCACAATGTTGAAAAGAAATCCCCAGCGAAGGATGCTAAGGAGGATATAACACAGGAAGGCTTGTCAACTCATAAATTGATATTGAAAGATGCTACAGAAGGAGAATTTATTAAGCAAGGAAGTGAGGAATCTGTCGGCAAGCTCAGCTCTGGTGAAAATAATAGCGACCAACTAGTAGAGTGTGAGAATGAGCAAAATGAAGATGAAAAGGAGGAGCTAGAGTTAAAAATTGACAATGCCTTGGATCAGTGCTTTTTCTGCTTGTACGGGTTAAACCTCAGATGTGACTCATCATATGACGACGATCTATCTGTACATAAAAATACTAGCCGTGGGGATTATCAGACCAAGGAACAGTGTGCTGATGTTTTCCAGTATATACTTCCTTATGCAAAGGCATCTTCTAGAACTGGACTAGTCAAACTGCGAAGGGTTCTAAGAGCCATCCGCAAACACTTTTTAAAACCTCCAGAGGAAGTATTGGATGGAAATGTGATAGACAAGTTCCTGGATGATCCCAATTTGTGTGAAGAGAAACTCTCTGACGAAGCTGGTTCAGATGAGTTTCTTGTAACAATGACAAAGATATTACTTAATGATGTAGGAAGCCTTAAACAATATCGAACATCAGTCTTAGGGAGCTCTGAATCATATGTGGAAGTTTATAGCAACTTGTATTTTTTCCTTGCTCAATCCGAGGAAATGAGTGCAACCGACAAATATCCAGGTTTTGTGCTCACCAAGGAAGGGGAGGAATTTGTACAACATAATGCAAGCCTCTTCAAATATGATTTACTGTATAATCCTCTGCGATTTGAGAGCTGGCAAAAACTTGCACATATTTATGATGAGGAGGTAGACCTGCTGCTCAATGATGGTAGTAAGCACATCAATGTTGCAGGATGGAGGAAAAATGATACTTTACCCCATAGAGTGGAGATAAGCCGAAGGAGGAGCAGGCGTTGTCTGCTTATGAGTTTAGCTTTAGCAAAGTCACCAACTCAGCAGCGTGAGATACATGAGCTACTAGCACTTGTGTACTATGACAGTCTTCAAAATGTGGTTCCATTTTATGATCAGCGGTTGGTGGTGCCTCCGAAGAATGAAGCATGGTTCAGATTTTGTGAGAATTCCTTGAAACATTTCAAAAAAGCTTTTGCACACCAGCAAGATTGGTCTCATGCATTCTATATGGGCAAACTTAGTGAAAAGCTCGGGCTTTCACACGATAAAGCTCTATCATATTATGCTAAAGCTATTGCCTTAAATCCATCAGCTGTTGATTCTATTTACAGGATGCATGCGTCACGCTTGAAGGTTCTTGGTAAATGTGGAAAACAGGATCTGCAGGCTTTGAAGGATCTTTCAACTTATGCCTTTAATCAGTCAACTAGAGATGCTTTGATGGAAATACTGAATAAATTTGGTTCCAAGACTTTGGATTTACCTTCAGGCGTGGATGGCAGCGAGGCAAATTCTGAGGATATAAAGCATGATGAATCCCTTAAAGTGGAAGAGGCGTGGCACATGCTTTACAACGATTGTCTTTATGGACTTGAAACTTGTGTTGAAGGGGATCTTAAACACTATCATAAAGCCAGATATGCACTTGCTCAAGGTCTTTATAGAAGGGGTGAGCGCGGTGATCTGGGCAGAGCAAAGGATGAGCTCTCATTTTGTTTTAAATCATCTCGTTCATCATTTACAATAAATATGTGGGAGATTGACAGCACGATAAAAAAGGGAAGGCGCAAAACACCTGGTCTTTCTGGGAATAAAAAAGCACTTGAAGTTAATTTACCAGAAAGTTCTCGGAAGTTTATTACATGTATAAGGAAGTACTTATTGTTTTATTTGAAACTTCTGGAGGAGACTGGAGATATCTGTACCCTTGAGCGTGCGTATATATCACTTCGAGCAGATAAAAGGTTTGCATTGTGCATTGAAGATCTAGTTCCAGTTGCTCTAGGGAGGTATGTCAAGGTTTTGATTACGTCTGTTCGTCAAGTTGGGATTGCCAGCTGTGGTGATGCAAGCGGTTATGAACATATACTAGAGAAAATATTTGCTCTGTTCATGGAGCAAGGTAACTTATGGCCAGAACTGTGCAGTTTGCATGAAATACAAGGACCGGGTATATCAGAAAGCAATTTGTTTGGGTATCTTCATGATCATATCATTACTTTGGAGAGAAATGTCAAGGTTGAGAATCTTGAAGCAATAAATGAGAAGATTCGCAAACGTTTTAAGAATCCGAAGTTGTCCAATATTAGCATTGCAAAAGTTTGCAGGCATGCTTCTACTGCATGGTGTAGATCCCTTATAATTAGCTTGGCACAGATCACTCCCGTTCCTTCTGAATCCTCAACCGAAATTCAAACGTCAAGTTCATTACCTGTTGGTTTAGAAAGTAACCAGCTACTTTGTGTGGATTTGCAAATTAATGAATTATGGAGTTCAACATTTGAGGACTCAACACATCTGAGAAGTCTTGAACCGAAATGGTGCCCGATCTTGTCCAAAATCAATAACGTATTTGTTAAAAGAGCTACAGAAGTGAATTGGGAAACTGCTAACTCTTTGCTTCGATCTTCTTACAACTTTTTTCGTGAGAGCTCTTGTGTGTTGCCATCTGGCTTGAACCTGTATCTAGTTCCAGGTCGACTGGCAACCGGAGTAAACTTCCAACGGCGCATGGATGGGGTTGAAATTCTAGAGTTCAGCATGCCAAGGAAGCTTCTCTTGTGGGCTTACACCCTAGTGTATGGTCATTTTGCTAATATTTCATCGGTGGTGAAGCATTGTGAAGAACATCTTAAGTCAAAGTTAAAGAAGGGAGCTGGAAATCCCGCCACACATGCTCACTCAAACCTGCCTGCTGTGATATCTTCATCAACAGTTCTAGGCATCGGAAAAGATGGTTCTAACTACAGTGGGGAGACTGATGCAGAAGCATCTCCAGCCACCCCAGTTACATCTACGTTGTTGCTGGAGAGTCAGGGCACGAGCAGTACCATGCCGCTTCTTTCTTCTGGCGACGCTCGTAAAAGTAACTTTTATGGCTCCCAACTTCAACAATGTAACAGTACCATTGCAGAGAGGATAGCTAATGGAGGAGATTCAGACAAAGGATGA 5937 40.49 MFSISAINDTDSRNQWEPLAPTKEAQEFHLTQTYHDGLLKLEAKEYEKARELLESVLKDHLIASAQVDGEAGDNHLLQLRFLALKNLAAVFLQQGSAHYEGALHCYLQAVEIDSKDSVVWNQLGTLSCSMGLLSISRWAFEQGLACSPNNWNCMEKLLEVLIAIRDEVACLSVAELILRHWPSHARALHVKRTIEEPEPVPYAPKGIDKLEPKHVRLKFTDKRKASEEDLDEDVKVKRSNRNIDLHLAEASWVGLVDGLLDILRPLSGCGSEVEVEKPLRSGDVGLKICLPPSLDCSTAFMERKELASTSISGNTSLADSNTENSSSFKEKEASGLDEHPQERRSTRLERLRSRKPGIEELDYSTSKDLARVVTQYLEPFISCALGTKDTEHDTRKFVSYPDQESKWDLDCYDVHTFLVENSCNYGAYHVSHMLLEKLSRTYPSFQDAFFKFLDLEKLTRHWGKDRSLECNLFLAELYFDFGSFSSDTSKQSEFMSEASYHLCKIIELVALEYPLNLSSVRKRDNGSSSLQGDSRISSENSSNQHLFVENSLFTNNRSFWVRFFWLSGQLSLWDGNKAKACEEFCISLSLLENKNDVHDSVSLVCLPHCRVLKRLTLDRLLYEINVLKVDLLMENAVPEMFEKEMFEECITLLSPLLFGVDELDIDALSLHFSGRKDAGVTSVELAAIDVLIKSCEKENRLDMEIYLNSHQRKLQILVAAAGMHEYFTSSKSFREKSEAKALSDIETKDSASSHCNHLVAEEVKAISHCISQVKNSIEHSGDSNDIQTRRISDMQFLLLSVMCNVINIFLSKKSSGVAVDDQVEKCCLVDAAIAFCKLQHLDLSVPVKSHVELIVATHDLLAEYGLCCWGEGEGEEGKFLKFSIKHLLALDMKLKLNSSVNGKRIECDDMEWQNCQVKASPDRPKLNAQDLGLSHNVEKKSPAKDAKEDITQEGLSTHKLILKDATEGEFIKQGSEESVGKLSSGENNSDQLVECENEQNEDEKEELELKIDNALDQCFFCLYGLNLRCDSSYDDDLSVHKNTSRGDYQTKEQCADVFQYILPYAKASSRTGLVKLRRVLRAIRKHFLKPPEEVLDGNVIDKFLDDPNLCEEKLSDEAGSDEFLVTMTKILLNDVGSLKQYRTSVLGSSESYVEVYSNLYFFLAQSEEMSATDKYPGFVLTKEGEEFVQHNASLFKYDLLYNPLRFESWQKLAHIYDEEVDLLLNDGSKHINVAGWRKNDTLPHRVEISRRRSRRCLLMSLALAKSPTQQREIHELLALVYYDSLQNVVPFYDQRLVVPPKNEAWFRFCENSLKHFKKAFAHQQDWSHAFYMGKLSEKLGLSHDKALSYYAKAIALNPSAVDSIYRMHASRLKVLGKCGKQDLQALKDLSTYAFNQSTRDALMEILNKFGSKTLDLPSGVDGSEANSEDIKHDESLKVEEAWHMLYNDCLYGLETCVEGDLKHYHKARYALAQGLYRRGERGDLGRAKDELSFCFKSSRSSFTINMWEIDSTIKKGRRKTPGLSGNKKALEVNLPESSRKFITCIRKYLLFYLKLLEETGDICTLERAYISLRADKRFALCIEDLVPVALGRYVKVLITSVRQVGIASCGDASGYEHILEKIFALFMEQGNLWPELCSLHEIQGPGISESNLFGYLHDHIITLERNVKVENLEAINEKIRKRFKNPKLSNISIAKVCRHASTAWCRSLIISLAQITPVPSESSTEIQTSSSLPVGLESNQLLCVDLQINELWSSTFEDSTHLRSLEPKWCPILSKINNVFVKRATEVNWETANSLLRSSYNFFRESSCVLPSGLNLYLVPGRLATGVNFQRRMDGVEILEFSMPRKLLLWAYTLVYGHFANISSVVKHCEEHLKSKLKKGAGNPATHAHSNLPAVISSSTVLGIGKDGSNYSGETDAEASPATPVTSTLLLESQGTSSTMPLLSSGDARKSNFYGSQLQQCNSTIAERIANGGDSDKG 1978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10174465 10185936 + CmaCh01G014450.1 Cma01g01445 287138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01445 1978 SUPERFAMILY TPR-like 86 1369 IPR011990 GO:0005515
Cma01g01445 1978 MobiDBLite consensus disorder prediction 1 19 - -
Cma01g01445 1978 SMART tpr_5 117 150 IPR019734 GO:0005515
Cma01g01445 1978 SMART tpr_5 81 116 IPR019734 GO:0005515
Cma01g01445 1978 SMART tpr_5 1326 1360 IPR019734 GO:0005515
Cma01g01445 1978 MobiDBLite consensus disorder prediction 973 999 - -
Cma01g01445 1978 Gene3D Tetratricopeptide repeat domain 7 192 IPR011990 GO:0005515
Cma01g01445 1978 MobiDBLite consensus disorder prediction 977 994 - -
Cma01g01445 1978 MobiDBLite consensus disorder prediction 1 21 - -
Cma01g01445 1978 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 1 1961 IPR033053 -
Cma01g01445 1978 MobiDBLite consensus disorder prediction 330 351 - -
Cma01g01445 1978 MobiDBLite consensus disorder prediction 311 329 - -
Cma01g01445 1978 Coils Coil 990 1017 - -
Cma01g01445 1978 MobiDBLite consensus disorder prediction 311 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01445 K17613 CABIN1; calcineurin-binding protein cabin-1 - csv:101222622 3357.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g39 . . . . . . . . . . Cma01g01445 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02317 Csa03g04535 Chy04g00168 . . . . . . . . . Sed05g1516 Cmo01g01499 . . . . . . Cpe02g00503 Bhi09g02556 Tan01g3903 Cmetu04g0903 . Hepe01g2205 Mch11g0755 . . . . . . . . . . . Cme04g00193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009721 1 3 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01445 Cma_Chr01 FPKM 6.153115 7.023019 6.5713 6.705925 9.316007 8.362191 9.198245 7.250109 5.73258 6.856061