Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01446 ATGGGAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATTGTTGAATCCCCAAATCTTCATCTCCACCAGTTTGAATACGCTTCCTGTTTCTAATATCAGAATCCAGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAGTGAGGTTGAAGAATTTGCTCCCAAGATTCGACAGGTTGTTGACTGGTTTGGGCAGCTCGAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCTGAAACATTCGAAAACAGAGAGGCCTTGATCGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG 438 46.35 MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLAETARISLNPSEVEEFAPKIRQVVDWFGQLEAVDLQSIEPSIRADTEGGNQRDDVSETFENREALIGAVPVFDEPYIRVPKVLNKE 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10186637 10190463 + CmaCh01G014460.1 Cma01g01446 287139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01446 145 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 50 143 IPR003837 GO:0006450
Cma01g01446 145 SUPERFAMILY Glu-tRNAGln amidotransferase C subunit 51 141 IPR036113 GO:0006450
Cma01g01446 145 TIGRFAM gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 55 142 IPR003837 GO:0006450
Cma01g01446 145 Gene3D - 53 93 - -
Cma01g01446 145 PANTHER UNCHARACTERIZED 26 145 IPR003837 GO:0006450
Cma01g01446 145 Pfam Glu-tRNAGln amidotransferase C subunit 67 138 IPR003837 GO:0006450
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01446 K02435 gatC, GATC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] - csv:101220103 228.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01446 Cma09g00621 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01446 Cma-Chr1:10186637 Cma09g00621 Cma-Chr9:2924217 2.48E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g40 . . . . . . . . . . Cma01g01446 . Car09g00550 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04534 Chy04g00169 . . . . . . . . . Sed05g1519 Cmo01g01500 . Cma09g00621 . . . . Cpe02g00502 Bhi09g02555 Tan01g3902 Cmetu04g3181 . . . . . . . . . . . . . . Cme04g00195
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008706 0 2 0 1 1 0 2 1 1 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 0 1 4 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01446 Cma_Chr01 FPKM 7.930256 7.214531 14.82193 14.168084 54.948368 56.900715 59.247547 14.567361 18.294476 15.565625