Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01447 ATGGCTTCTGTGGAATTGGGGAAGCCGAGTTATGAGGCTATGAGCCAAGGGGAAACCAGAGGACGATTGGAGAATGAGAAGAGAGAAGAAGCGAGAAATGTGATGAAGAAGAATGGAAATCGTACAGTATCGTTTTCCTTACCTATGCTCGGATGCGGATGTTTCAGAGTACAACGCGATGAGGAAGGGAATTTGGATATGGACGTCGTCAATGGCTCTGGGGATCGTCGGCAGCCCACCCACCTTCTTATAATGGTTAACGGTCTCTTTGGCAGTGCCAAAGATTGGAAATATGCAGCGGAGGCGTTTTTGAAGATGTATCCTGAAGATATGGTTGTTCATTGCAGTAAACGTAATTACTCAACATTGACTCTTGATGGTGTTGATGTGATGGGAGAAAGACTAGCAGAAGAGATTTTGTCAGTTATTAGGAGACATTCCAGTGTCCAAAAGATCTCATTCGTATGCCATTCATTAGGCGGACTGATAGCAAGGTATGCCATTGCAAAGCTTTATGAGCAAGATGCACTAAGAGAAGATGTCCAAGTAAATGGAGAGTATGACAAACATGGGCTTAGAGATCAAAGCAAAGAAGAGGAATTTAAAGGAAAAATAGCAGGGCTGGAACCAATTAATTTTATAACATGTGCGACCCCACATCTGGGTTCAAGAGGGCATAAACAGGTTCCTATGTGTTGTGGCTTTTATGCCCTGGAAAAAGTAGCTGTTGGCACATCATATTTCTTTGGAAGAACTGGGAGGCAATTATTTTTAATTGACAAGGACAGTGGAAAATGCCCCCTTCTTTTTCATATGGCTGGTGATCGTGAAGATCTCAAATTCTTATCTGCTTTGCAGTCGTTTAGACGACGTGTTACCTATGCTAATGCACGTTACGACAACGTCGTTGGATGGTGTACATCTTCTATCAGGCGTCACAAAGAGTTGCCAAAGCTCAAAGGGTTATCAGGCGATAGTAAATATCCATATATTGTAAATGTAGAGATGGCAAAAATTTCCAGTCCTGAGTTATATGTGCCATCAGAGGCCGAAGCCAATGGATACAAGAAAGCTGTTTTGGAAGAAGAAATGATCAAAGGTTTATTGAGCATGAGCTGGGAGCGAGTCGATGTTGACTTTCACAAAAGTAAACAAAGGAATAATGCTCACCTTACCATTCAGGTTAATAGGTACAAAGACAATTCCGATGGCGCCTGTGTGATCCAACATATGATTGACAAGTTTATCTTGTAG 1254 42.11 MASVELGKPSYEAMSQGETRGRLENEKREEARNVMKKNGNRTVSFSLPMLGCGCFRVQRDEEGNLDMDVVNGSGDRRQPTHLLIMVNGLFGSAKDWKYAAEAFLKMYPEDMVVHCSKRNYSTLTLDGVDVMGERLAEEILSVIRRHSSVQKISFVCHSLGGLIARYAIAKLYEQDALREDVQVNGEYDKHGLRDQSKEEEFKGKIAGLEPINFITCATPHLGSRGHKQVPMCCGFYALEKVAVGTSYFFGRTGRQLFLIDKDSGKCPLLFHMAGDREDLKFLSALQSFRRRVTYANARYDNVVGWCTSSIRRHKELPKLKGLSGDSKYPYIVNVEMAKISSPELYVPSEAEANGYKKAVLEEEMIKGLLSMSWERVDVDFHKSKQRNNAHLTIQVNRYKDNSDGACVIQHMIDKFIL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10191260 10195732 + CmaCh01G014470.1 Cma01g01447 287140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01447 417 Gene3D alpha/beta hydrolase 75 315 IPR029058 -
Cma01g01447 417 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 25 416 - -
Cma01g01447 417 SUPERFAMILY alpha/beta-Hydrolases 78 310 IPR029058 -
Cma01g01447 417 MobiDBLite consensus disorder prediction 1 28 - -
Cma01g01447 417 Pfam Putative serine esterase (DUF676) 77 307 IPR007751 -
Cma01g01447 417 PANTHER UNCHARACTERIZED 25 416 IPR044294 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01447 - - - bhj:120085399 685.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01447 Cma09g00619 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01447 Cma-Chr1:10191260 Cma04g00358 Cma-Chr4:1784593 1.81E-110 dispersed
Cma10g00417 Cma-Chr10:1906668 Cma01g01447 Cma-Chr1:10191260 1.99E-06 dispersed
Cma01g01447 Cma-Chr1:10191260 Cma09g00619 Cma-Chr9:2918772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g588 Blo01g01781 . Bda01g00855 . Bpe02g00160 . . Bma01g02565 . . Cma01g01447 Cma09g00619 . . . Cpe06g00478 . . . . . . . . . . . . . . . Cone4ag1259 . . . Lsi04g02315 Csa03g04533 Chy04g00170 . . . Bda11g00819 . Bpe02g01094 . . . . Cmo01g01501 Cmo09g00604 . . . Car09g00549 . Cpe02g00501 Bhi09g02551 . . . . . . Cla11g01465 Cam11g1518 Cec11g1556 Cco11g1551 Clacu11g1682 Cmu11g1499 . . . . Cme04g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006304 1 3 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma01g01447 Cma_Chr01 FPKM 3.238335 4.076334 3.689367 3.637426 4.233715 3.910938 4.774579 1.767328 2.051378 2.061607