Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma01g01455 ATGGTTGTTCAGTTGTTGTTCTTCTTCTTTCTTGTCTCTTTGATTTCTCCGGCGGTCGGGAATGATCAGTCGGAGTTTTTCTCTCTGATGAAACAGACGGTGGTCGGGAATTCTCTGCCGTCTGATTGGGATGGGAAATCGTTCTGTAACTTCACCGGCGTGAGCTGTAATGAAATGGGGTTTGTGGTGGGGATTGATCTTTCAGGTCGGGTGGTTTCCGGGAGGTTTCCACCGGATGTTTGTTCTTATTTGCCGGAATTGAGAGTGCTCCGTCTTGGCCGGAGTGGGTTTCGTGGGACTTTTCCACATGGGATAATGAATTGCTCTGTTTTGGAAGAACTGGATATGACTTTTCTGTATCTAACAGGGACGCTACCGGATTTCTCGCCGTTGAAAAATTTAAGGACTCTCGACTTGTCGTACAACAATTTCACCGGCGACTTTCCGTTGTCGGTCTTCAATTTGACAAATCTCGAGAGGCTGAATTTCAATGAAGATAGTAATTTCAACACGTGGCAGTTGCCGGAGAGTATCTCCGGCTTGACGAAGCTGAAATCAATGGTGTTGACGACATGTATGCTGGAAGGTCGGATTCCGGCGACGATTGGGAACATGACATCGCTCGTTGACCTGGAATTAAGCGGCAATTTCCTCGCCGGAAAAATCCCGAGAGAAATCGGAAATCTGAAGAACTTGAGAGACTTGGAGCTTTATTACAACTTTTTAATCGGCGAAATTCCAGAGGAGCTTGGGAATTTGACAGAACTCGTGGACTTGGACATGTCGGTCAACAAGTTGACTGGGACGCTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTGGAAGTTCTTCAGCTTTACAATAACAGCTTAACAGGGGAGATTCCAATTTCAATTTCGAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACAGGACAAGTTCCAAGTAATTTGGGTCAATTCTCGCCAATGGTCGTTCTCGACTTGTCGGAAAATGATTTCTCCGGTCGGTTACCGATGGATGTCTGTGGAGAAGGTAAATTAATGTATTTTCTCGTGTTGCAAAACAAATTCTCCGGTGAAATCCCGCCGTCGTACGGTAAATGCCAGTCACTTTTACGGTTTCGTGTCAGTTCCAATTTATTAACCGGTCCGGTGCCGGAGGGGCTTCTGGGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATCTAACCGGCGAGATTCCGAATTCTTTTGTGAAAGCTAGAAATCTCTCCGAGTTGTTCATGCAGAGTAATAAAATTTCCGGCGTGTTGCCGCCGGGAATTTCTGAAGCGACCAATTTGGTTAAGATTGATCTCAGCTACAATCTCTTGTCGGGCCCGATTTCTTCCGAAATTGGGAATCTCCGGCGGCTTAATTTGTTGCTTTTACAAGGAAATCAGCTGAATTCTTCAATACCCACTTCACTTTCTCAGCTGAAATCTCTGAATGTTCTTGATTTATCCGACAATCGTTTGACCGGAAACATCCCAGAAAGCCTCTGCGAGTTGCTGCCGAATTCAATCAATTTCTCAAACAATCAACTCTCCGGTCCGATTCCTCTGTCTCTGATCAAAGGCGGGCTCGCCGAAAGCTTCTCCGGCAATACGGGGCTCTGCGTTTCGGTTTATTTAGATTCCTCCGATCACAAATTCCCAATTTGTTCACAAAACTACAACAAAAAGCGGCTGAATTCCATCTGGGCAATCGGAATATCAGCGTTCATAATCTTCATCGGCGCTGCTCTGTATCTACGACGGCGATTCAGCAGAGAAAAATCAGTAATGGAACAGGACGAAACACTGTCGTCATCGTTTTTCTCGTACGACGTCAAAAGCTTCCACCGAATTAGCTTCGACCCACGAGAGATAATCGAATCGATGGTCGATAAGAACATCGTCGGCCATGGCGGCTCCGGCACGGTGTACAAAATCGAATTAAACAGCGGCGAAATCGTCGCCGTTAAACGGCTATGGAGTCGGAAGGGGAAGGATACGACGTCGGATCAAGATCAATTGTATTTGGATAAGGAATTAAAAACAGAGGTGGAGACCTTGGGGAGTATACGGCATAAAAATATAGTGAAATTATATTGCTATTTCTCCAGCTTGGATTGCAGCCTTTTGGTCTATGAGTATATGCCAAATGGCAACTTATGGGACGCCCTCCATAAGGGTTGGGTTCATTTGGAGTGGCCAACGCGGCACCAAATTGCGCTCGGAATAGCGCAGGGCTTGGCTTATCTTCACCATGACTTGTTGCCTTCTATTATCCATAGGGACATTAAGACCACTAATATCTTACTCGACGTGAATTATCACCCAAAAGTTGCGGATTTCGGCATCGCTAAGGTTTTGCAAGCTCGAGCCGGAAAGGATTCCACTACTACTGTCATTGCGGGGACCTATGGCTATCTCGCTCCAGAGTATGCATATTCATCAAAAACAACAACGAAATGTGACGTATACAGTTTTGGGATTGTGTTAATGGAGCTGATAACTGGGAAGAAGCCGGTGGAGGCGGAGTTTGGAGATAATAAGAATATTATATACTGGGTGTCGAATAAAGTAGACACGAAAGAAGGAGCTATGGAAGTTTTAGACAAGAGAGTTTCGGCGTCGTTCAAAGATGAAATGATTCAAGTTCTGAGGATTGCAATTCGTTGCACGTACAAGAATCCAGCTCTTCGACCTACCATGAAGGAAGTGGCTCAGTTGTTAATTGAAGCCAACCCTTGCAAATTCGATTCTCAAAATAACAAATGCTCGAAACACTCCTTCGCCAAAATCAAGAACAACCCATTTGAGCTATGA 2853 45.01 MVVQLLFFFFLVSLISPAVGNDQSEFFSLMKQTVVGNSLPSDWDGKSFCNFTGVSCNEMGFVVGIDLSGRVVSGRFPPDVCSYLPELRVLRLGRSGFRGTFPHGIMNCSVLEELDMTFLYLTGTLPDFSPLKNLRTLDLSYNNFTGDFPLSVFNLTNLERLNFNEDSNFNTWQLPESISGLTKLKSMVLTTCMLEGRIPATIGNMTSLVDLELSGNFLAGKIPREIGNLKNLRDLELYYNFLIGEIPEELGNLTELVDLDMSVNKLTGTLPESICRLPKLEVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENDFSGRLPMDVCGEGKLMYFLVLQNKFSGEIPPSYGKCQSLLRFRVSSNLLTGPVPEGLLGLPHVSIIDFGNNNLTGEIPNSFVKARNLSELFMQSNKISGVLPPGISEATNLVKIDLSYNLLSGPISSEIGNLRRLNLLLLQGNQLNSSIPTSLSQLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLAESFSGNTGLCVSVYLDSSDHKFPICSQNYNKKRLNSIWAIGISAFIIFIGAALYLRRRFSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELNSGEIVAVKRLWSRKGKDTTSDQDQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWVHLEWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKTTTKCDVYSFGIVLMELITGKKPVEAEFGDNKNIIYWVSNKVDTKEGAMEVLDKRVSASFKDEMIQVLRIAIRCTYKNPALRPTMKEVAQLLIEANPCKFDSQNNKCSKHSFAKIKNNPFEL 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10221745 10224951 - CmaCh01G014550.1 Cma01g01455 287148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma01g01455 950 Gene3D Phosphorylase Kinase; domain 1 624 726 - -
Cma01g01455 950 Gene3D Ribonuclease Inhibitor 226 294 IPR032675 -
Cma01g01455 950 ProSiteProfiles Leucine-rich repeat profile. 495 517 IPR001611 GO:0005515
Cma01g01455 950 Gene3D Ribonuclease Inhibitor 295 562 IPR032675 -
Cma01g01455 950 Gene3D Transferase(Phosphotransferase) domain 1 727 945 - -
Cma01g01455 950 Gene3D Ribonuclease Inhibitor 21 167 IPR032675 -
Cma01g01455 950 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524
Cma01g01455 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Cma01g01455 950 SMART serkin_6 641 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01455 950 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 7 937 - -
Cma01g01455 950 SUPERFAMILY RNI-like 65 340 - -
Cma01g01455 950 SUPERFAMILY Protein kinase-like (PK-like) 628 920 IPR011009 -
Cma01g01455 950 ProSiteProfiles Protein kinase domain profile. 641 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01455 950 SUPERFAMILY RNI-like 246 537 - -
Cma01g01455 950 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 937 - -
Cma01g01455 950 Gene3D Ribonuclease Inhibitor 168 225 IPR032675 -
Cma01g01455 950 PRINTS Leucine-rich repeat signature 256 269 - -
Cma01g01455 950 PRINTS Leucine-rich repeat signature 493 506 - -
Cma01g01455 950 SMART LRR_typ_2 493 517 IPR003591 -
Cma01g01455 950 SMART LRR_typ_2 131 155 IPR003591 -
Cma01g01455 950 SMART LRR_typ_2 277 301 IPR003591 -
Cma01g01455 950 SMART LRR_typ_2 229 253 IPR003591 -
Cma01g01455 950 Pfam Protein kinase domain 643 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma01g01455 950 Pfam Leucine Rich Repeat 133 152 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01455 Cma05g00571 CCT
Cma01g01455 Cma12g00230 CCT
Cma01g01455 Cma09g00611 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01455 Cma-Chr1:10221745 Cma09g00612 Cma-Chr9:2893612 0 dispersed
Cma01g01455 Cma-Chr1:10221745 Cma01g01456 Cma-Chr1:10227901 0 tandem
Cma01g01455 Cma-Chr1:10221745 Cma09g00611 Cma-Chr9:2889430 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68290 PF00069 Pkinase 8.30E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma01g01455 - - csv:101222864 1665.59